Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SanJ4206_RS00960 Genome accession   NZ_CP012719
Coordinates   179442..180860 (+) Length   472 a.a.
NCBI ID   WP_100069431.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 174442..185860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS00935 (SanJ4206_0148) dinB 175136..176203 (+) 1068 WP_022525442.1 DNA polymerase IV -
  SanJ4206_RS00940 - 176469..177578 (-) 1110 Protein_147 IS110 family transposase -
  SanJ4206_RS00950 (SanJ4206_0152) - 177911..178945 (+) 1035 WP_157622001.1 S66 family peptidase -
  SanJ4206_RS00955 (SanJ4206_0153) - 179039..179482 (+) 444 WP_003029453.1 dUTP diphosphatase -
  SanJ4206_RS00960 (SanJ4206_0154) radA 179442..180860 (+) 1419 WP_100069431.1 DNA repair protein RadA Machinery gene
  SanJ4206_RS00965 (SanJ4206_0155) gltX 181068..182525 (+) 1458 WP_022525455.1 glutamate--tRNA ligase -
  SanJ4206_RS00970 (SanJ4206_0156) dapD 182640..183338 (+) 699 WP_003029450.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SanJ4206_RS00975 (SanJ4206_0157) - 183351..184481 (+) 1131 WP_022525454.1 N-acetyldiaminopimelate deacetylase -
  SanJ4206_RS00980 (SanJ4206_0158) - 184526..185053 (+) 528 WP_003029448.1 5-formyltetrahydrofolate cyclo-ligase -
  SanJ4206_RS00985 (SanJ4206_0159) - 185046..185726 (+) 681 WP_003029447.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51399.12 Da        Isoelectric Point: 5.4213

>NTDB_id=156746 SanJ4206_RS00960 WP_100069431.1 179442..180860(+) (radA) [Streptococcus anginosus strain J4206]
MVCGQVVLEALGIKKEESIIAKKKATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARISLTGGKSRPMKLAE
VTSINVNRTKTDMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIGVTTIGEVLEKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=156746 SanJ4206_RS00960 WP_100069431.1 179442..180860(+) (radA) [Streptococcus anginosus strain J4206]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCAACATT
TGTTTGTCAAAATTGTGAATATCATTCCCCCAAGTATTTAGGGCGCTGTCCTAACTGTGGGGCTTGGTCGTCCTTTGTCG
AAGAGGTCGAAGTTACGGAGGTTAAGAATGCGCGTATTTCTCTGACAGGGGGAAAAAGTCGACCGATGAAGTTAGCAGAG
GTGACTTCTATCAATGTCAACCGTACCAAGACAGATATGGAAGAGTTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCAGGTATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AAGGAACGGTCTTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTGCGCGCGGAACGTCTAGGCGATATTGAT
AGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATCAAACCAGATTTTTTGAT
TATAGATTCCATTCAGACGATTCTATCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCGCAAGTGCGAGAAGTGACAG
CGGAGCTGATGCAGCTGGCAAAAACCAACAATATTGCCACCTTTATCGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACTTTGGAACATATGGTGGATACAGTACTTTATTTTGAGGGTGAGCGTCAACATACTTTTCGTATTTTGCG
AGCGGTTAAAAACCGCTTCGGCTCTACGAATGAAATCGGTATTTTTGAAATGCAGTCAGGTGGTCTGGTTGAAGTACTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGAGCGACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGACTT
TAATCGCGCCAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTAGATGAGCCAGCTATTGACTTAGCTGTTGCCGTTGCAATTGCTTCGAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCGAAA
CTATTGAAGTTATTGGTGTAACAACGATTGGAGAAGTATTGGAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

AAA domain (AAA_25)

(83-237)

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.814

95.763

0.879
  radA Streptococcus pneumoniae D39

91.814

95.763

0.879
  radA Streptococcus pneumoniae R6

91.814

95.763

0.879
  radA Streptococcus pneumoniae TIGR4

91.814

95.763

0.879
  radA Streptococcus mitis SK321

91.814

95.763

0.879
  radA Streptococcus mitis NCTC 12261

91.593

95.763

0.877
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

96.822

0.606

Multiple sequence alignment