Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   AN159_RS05855 Genome accession   NZ_CP012694
Coordinates   1093466..1093930 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088466..1098930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS05830 (AN159_05880) - 1089750..1090022 (-) 273 WP_002234162.1 ACT domain-containing protein -
  AN159_RS05835 (AN159_05885) - 1090148..1090885 (-) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  AN159_RS05840 (AN159_05890) prmB 1091166..1092065 (-) 900 Protein_1102 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  AN159_RS05845 (AN159_05895) - 1092210..1092803 (+) 594 WP_002246348.1 hypothetical protein -
  AN159_RS05850 (AN159_05900) - 1092915..1093352 (+) 438 Protein_1104 HK97 family phage prohead protease -
  AN159_RS05855 (AN159_05905) comE 1093466..1093930 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=156597 AN159_RS05855 WP_010981060.1 1093466..1093930(-) (comE) [Neisseria meningitidis strain 331401]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=156597 AN159_RS05855 WP_010981060.1 1093466..1093930(-) (comE) [Neisseria meningitidis strain 331401]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment