Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CjjRM3196_RS03090 Genome accession   NZ_CP012690
Coordinates   587775..588548 (+) Length   257 a.a.
NCBI ID   WP_002855109.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 582775..593548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS03075 (CjjRM3196_0608) - 583624..585558 (-) 1935 WP_002854954.1 RNB domain-containing ribonuclease -
  CjjRM3196_RS03080 (CjjRM3196_0609) ilvC 585677..586699 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  CjjRM3196_RS03085 (CjjRM3196_0610) - 586703..587785 (+) 1083 WP_002854844.1 divergent polysaccharide deacetylase family protein -
  CjjRM3196_RS03090 (CjjRM3196_0611) dprA 587775..588548 (+) 774 WP_002855109.1 DNA-processing protein DprA Machinery gene
  CjjRM3196_RS03095 (CjjRM3196_0612) ruvX 588545..588928 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX -
  CjjRM3196_RS03100 (CjjRM3196_0613) - 588957..589796 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CjjRM3196_RS03105 (CjjRM3196_0614) msrA 589972..590469 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CjjRM3196_RS03110 (CjjRM3196_0615) ppa 590510..591028 (-) 519 WP_002855031.1 inorganic diphosphatase -
  CjjRM3196_RS03115 (CjjRM3196_0616) adk 591038..591616 (-) 579 WP_002855137.1 adenylate kinase -
  CjjRM3196_RS03120 (CjjRM3196_0617) aspS 591613..593364 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28802.69 Da        Isoelectric Point: 7.6510

>NTDB_id=156441 CjjRM3196_RS03090 WP_002855109.1 587775..588548(+) (dprA) [Campylobacter jejuni subsp. jejuni strain RM3196]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=156441 CjjRM3196_RS03090 WP_002855109.1 587775..588548(+) (dprA) [Campylobacter jejuni subsp. jejuni strain RM3196]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

99.611

0.996
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment