Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CjjRM3196_RS02900 Genome accession   NZ_CP012690
Coordinates   545848..546498 (-) Length   216 a.a.
NCBI ID   WP_002855187.1    Uniprot ID   A0A3H9FWN6
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 540848..551498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS02865 (CjjRM3196_0566) - 541226..542230 (+) 1005 WP_074468932.1 hypothetical protein -
  CjjRM3196_RS02870 (CjjRM3196_0567) tlyA 542227..542988 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  CjjRM3196_RS02875 (CjjRM3196_0568) ribF 542954..543808 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  CjjRM3196_RS02880 (CjjRM3196_0569) cmoA 543795..544505 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CjjRM3196_RS02885 (CjjRM3196_0570) - 544495..544716 (-) 222 WP_002859102.1 EexN family lipoprotein -
  CjjRM3196_RS02890 (CjjRM3196_0571) - 544713..545147 (-) 435 WP_002855128.1 EexN family lipoprotein -
  CjjRM3196_RS02895 (CjjRM3196_0572) - 545205..545837 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  CjjRM3196_RS02900 (CjjRM3196_0573) CJE0566 545848..546498 (-) 651 WP_002855187.1 DNA/RNA non-specific endonuclease Regulator
  CjjRM3196_RS02905 (CjjRM3196_0574) nth 546495..547121 (-) 627 WP_002852225.1 endonuclease III -
  CjjRM3196_RS02910 (CjjRM3196_0575) peb4 547202..548023 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  CjjRM3196_RS02915 (CjjRM3196_0576) fbaA 548023..549087 (+) 1065 WP_002855126.1 class II fructose-bisphosphate aldolase -
  CjjRM3196_RS02920 (CjjRM3196_0577) - 549182..550624 (+) 1443 WP_002854979.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25505.26 Da        Isoelectric Point: 9.7361

>NTDB_id=156440 CjjRM3196_RS02900 WP_002855187.1 545848..546498(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain RM3196]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=156440 CjjRM3196_RS02900 WP_002855187.1 545848..546498(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain RM3196]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9FWN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment