Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CjjRM3197_RS07435 Genome accession   NZ_CP012689
Coordinates   1439615..1439926 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain RM3197     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1434615..1444926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3197_RS07415 (CjjRM3197_1471) ctsE 1435485..1437043 (-) 1559 Protein_1428 GspE/PulE family protein -
  CjjRM3197_RS07420 (CjjRM3197_1472) ctsX 1437033..1437620 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CjjRM3197_RS07425 (CjjRM3197_1473) ctsP 1437624..1438232 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CjjRM3197_RS07430 (CjjRM3197_1474) ctsD 1438225..1439637 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CjjRM3197_RS07435 (CjjRM3197_1475) ctsR 1439615..1439926 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CjjRM3197_RS07440 (CjjRM3197_1476) nifJ 1439950..1443510 (-) 3561 WP_002855379.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CjjRM3197_RS07445 (CjjRM3197_1477) - 1443603..1444244 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=156433 CjjRM3197_RS07435 WP_002855438.1 1439615..1439926(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain RM3197]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=156433 CjjRM3197_RS07435 WP_002855438.1 1439615..1439926(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain RM3197]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment