Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   CjjRM3197_RS07425 Genome accession   NZ_CP012689
Coordinates   1437624..1438232 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain RM3197     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432624..1443232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3197_RS07400 (CjjRM3197_1468) - 1432783..1433545 (+) 763 Protein_1425 TIGR02757 family protein -
  CjjRM3197_RS07405 (CjjRM3197_1469) - 1433549..1434313 (+) 765 WP_002855301.1 TSUP family transporter -
  CjjRM3197_RS07410 (CjjRM3197_1470) ctsF 1434310..1435488 (-) 1179 WP_002855409.1 type II secretion system F family protein Machinery gene
  CjjRM3197_RS07415 (CjjRM3197_1471) ctsE 1435485..1437043 (-) 1559 Protein_1428 GspE/PulE family protein -
  CjjRM3197_RS07420 (CjjRM3197_1472) ctsX 1437033..1437620 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CjjRM3197_RS07425 (CjjRM3197_1473) ctsP 1437624..1438232 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CjjRM3197_RS07430 (CjjRM3197_1474) ctsD 1438225..1439637 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CjjRM3197_RS07435 (CjjRM3197_1475) ctsR 1439615..1439926 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=156431 CjjRM3197_RS07425 WP_002851464.1 1437624..1438232(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain RM3197]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=156431 CjjRM3197_RS07425 WP_002851464.1 1437624..1438232(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain RM3197]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment