Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RSUY_RS07515 Genome accession   NZ_CP012687
Coordinates   1642992..1645532 (+) Length   846 a.a.
NCBI ID   WP_003264256.1    Uniprot ID   A0AB33VBM7
Organism   Ralstonia solanacearum strain UY031     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1637992..1650532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSUY_RS07495 (RSUY_15330) - 1639009..1640088 (-) 1080 WP_039555799.1 hypothetical protein -
  RSUY_RS07500 (RSUY_15340) - 1640161..1641411 (+) 1251 WP_003268713.1 lipoprotein-releasing ABC transporter permease subunit -
  RSUY_RS07505 (RSUY_15350) lolD 1641404..1642147 (+) 744 WP_003264259.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RSUY_RS07510 (RSUY_15360) - 1642167..1642982 (+) 816 WP_003264258.1 TatD family hydrolase -
  RSUY_RS07515 (RSUY_15370) comA 1642992..1645532 (+) 2541 WP_003264256.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RSUY_RS07520 (RSUY_15380) - 1645638..1647119 (+) 1482 WP_003264255.1 circularly permuted type 2 ATP-grasp protein -
  RSUY_RS07525 (RSUY_15390) - 1647198..1648160 (+) 963 WP_003264254.1 alpha-E domain-containing protein -
  RSUY_RS07530 (RSUY_15400) - 1648218..1649054 (+) 837 WP_020957273.1 transglutaminase family protein -
  RSUY_RS07535 (RSUY_15410) - 1649139..1650053 (+) 915 WP_013206400.1 hypothetical protein -

Sequence

Protein


Download         Length: 846 a.a.        Molecular weight: 90501.98 Da        Isoelectric Point: 10.0526

>NTDB_id=156394 RSUY_RS07515 WP_003264256.1 1642992..1645532(+) (comA) [Ralstonia solanacearum strain UY031]
MRALLIGFVAGCMALQTRPVLVPVWQPVLLALACGLIALALRRAGRSPMLISGIAVLVAACVGFGWSDWRAQQRLSVVLA
PEWEGKAIQATGVVAELPQVTEDATRFLFHIESSDAGDAVPPRVRLSWYGKRSWNERRRERGAIADRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPDGFDGEYAMLADDIRAAGTVQTGKRARNVLIGEADAGFGLQVERWRAAVRRHILAALPDARYGPV
MVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLARWLRTPLPLRMPAQRAGAIAAM
AAAFAYCLLAGMGVPAQRTLLMLATVAVARLTDRSVPASLSLCWAAAVVALVDPWAVMSAGFWLSFGAVAVIFLATRMAA
ADAGGNDRQSTWPRRAWRALCGGARIQLAVTFGLLPLTLLLFQQVSVVSAAANALAIPVVSLVTTPLALIGAALPERWAQ
PVLAWAEASFGWLVSWLDGLAAPAWSVWTAPVAPAWAWLLAIGGVPLLLAPGGHRAWAWRAQGALLLLPMLLARAPAPPP
GAFRLVAFDIGQGAAALVETAGHRLLFDTGPRYGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAGVP
VRTMLASLPPGHRLGERARAYGIDTAGCLAGQRWTWDGVAFEILHPVQAPPDRAPASSNARSCVLRIAGERHAALLAGDI
GSAQEMALIAAEAPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAIFQVGYRNRYGHPHPQVWQRYGARDIERLRTDAA
GAVVIETGGDALEVRTARSMRPRYWSSALEVAALADATEAPADAQP

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=156394 RSUY_RS07515 WP_003264256.1 1642992..1645532(+) (comA) [Ralstonia solanacearum strain UY031]
ATGCGCGCCCTGCTGATCGGCTTTGTCGCGGGGTGCATGGCGTTGCAGACGAGGCCGGTGCTGGTGCCGGTCTGGCAGCC
GGTGCTGCTGGCGCTGGCGTGCGGTTTGATTGCGTTGGCGCTGCGGCGCGCGGGGCGGTCGCCGATGCTCATCTCCGGGA
TCGCGGTGCTGGTGGCTGCGTGTGTCGGCTTCGGCTGGAGCGACTGGCGCGCGCAGCAGCGGCTGTCCGTGGTGCTGGCG
CCCGAATGGGAAGGCAAGGCCATCCAGGCGACGGGCGTCGTGGCCGAGCTGCCGCAGGTCACCGAGGACGCCACGCGTTT
CCTGTTCCACATCGAATCCAGCGACGCAGGCGACGCCGTGCCGCCGCGCGTGCGCCTGTCGTGGTACGGCAAGCGCAGCT
GGAACGAGCGGAGGCGGGAGCGTGGGGCGATCGCCGATCGCCGTGCCGGCATCCCCGATCTGCAGCCCGGCCAGCGCTGG
CAACTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGACGGCTTCGACGGCGAATACGCGATGCTCGCCGA
CGACATCCGCGCCGCAGGCACCGTGCAGACCGGCAAACGCGCGCGCAATGTGCTGATTGGCGAAGCCGATGCCGGTTTCG
GTCTCCAGGTCGAGCGTTGGCGTGCCGCGGTGCGGCGGCATATCCTCGCCGCCTTGCCCGATGCGCGTTATGGACCGGTG
ATGGTCGCCCTGGTGGTGGGCGATCAGAGCGGCATCGCGCAAGCGGATTGGGAGCGCTTCCGCCGCACCGGCATCAGCCA
TCTCGTCAGTATTTCCGGCCTGCACATCACGATGATCGCCGGGCTGTTCGCCGCGCTCTGGATGGCGCTGTGGCGGCGCT
CGTTCGGCCTGGCCCGCTGGTTGCGCACGCCGTTGCCGCTGCGCATGCCGGCCCAGCGCGCCGGTGCCATCGCCGCGATG
GCGGCGGCGTTCGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGACCGTCGC
CGTGGCGCGGCTGACCGATCGCAGCGTGCCGGCCAGCCTGTCGCTGTGCTGGGCTGCGGCCGTGGTGGCGCTGGTGGATC
CTTGGGCGGTCATGTCGGCGGGATTCTGGCTGTCGTTCGGCGCGGTAGCGGTCATCTTCCTGGCCACGCGGATGGCTGCA
GCCGATGCCGGGGGCAATGACCGGCAGTCCACCTGGCCCAGGCGCGCCTGGCGCGCCCTGTGCGGTGGCGCGCGCATCCA
GTTGGCCGTGACGTTCGGCCTGCTGCCGTTGACGCTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGCGGCCAACG
CGCTCGCGATTCCGGTGGTCAGCCTGGTCACCACGCCGCTGGCGTTGATCGGCGCGGCGCTGCCCGAGCGGTGGGCGCAG
CCGGTGCTGGCGTGGGCCGAGGCCAGCTTCGGGTGGCTCGTGTCGTGGCTGGATGGACTGGCGGCACCCGCCTGGTCGGT
GTGGACGGCGCCCGTCGCGCCCGCCTGGGCGTGGCTGCTGGCCATCGGCGGCGTGCCGTTGCTGCTCGCGCCGGGCGGGC
ATCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGCTCTTGCTGCTGCCGATGCTGCTCGCTCGTGCGCCGGCACCGCCGCCG
GGCGCGTTCCGCCTGGTCGCATTCGATATCGGCCAGGGCGCCGCCGCGCTGGTCGAGACGGCCGGCCACCGGCTGCTGTT
CGATACCGGCCCGCGCTATGGCGACCTGGCCGATGCCGCTGACCGTGTGATCGTCCCGTATCTGCGCGGACACGGCGTAC
AGGCCATCGATACGCTGGTGGTCAGCCACGAGGACAGCGACCACGCCGGCGGCACCGAAACGGTGATGGCCGGGGTGCCG
GTGCGCACCATGCTGGCGTCCTTGCCGCCCGGCCACCGGCTCGGCGAGCGGGCCCGCGCCTACGGCATCGATACCGCGGG
CTGCCTGGCGGGGCAGCGCTGGACCTGGGATGGCGTTGCCTTCGAAATCCTGCATCCGGTGCAGGCGCCCCCCGATAGGG
CGCCGGCGTCCAGCAACGCCCGCAGCTGCGTGCTGCGCATTGCCGGCGAGCGCCATGCCGCCTTGCTGGCCGGCGACATC
GGCAGCGCCCAGGAAATGGCGCTGATCGCCGCCGAAGCACCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCCCCATCA
CGGCAGCAAGACGAGCTCCAGCGGTGCGTTTCTGGACGCGGTTTCTCCGCAGGTGGCGATTTTCCAGGTCGGCTACCGCA
ACCGGTATGGGCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGAGACATCGAGCGGCTGCGTACCGACGCAGCC
GGGGCCGTCGTCATCGAGACGGGCGGCGATGCACTGGAGGTGCGGACCGCGCGGTCGATGCGGCCGCGCTACTGGTCCTC
GGCGCTCGAGGTGGCAGCCCTGGCAGACGCCACGGAGGCGCCCGCCGACGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(583-743)

Domain of unknown function (DUF4131) (DUF4131)

(23-197)

Competence protein (Competence)

(244-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

85.377

100

0.856

Multiple sequence alignment