Detailed information NTG0156175

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLUC77_RS11240
• Genome accession: NZ_CP015906
• Coordinates: 2175889..2176965 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain UC77
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2170889..2181965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC77_RS11215 (LLUC77_2218)	pgsA	2171049..2171621 (-)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLUC77_RS11220 (LLUC77_2219)	-	2171662..2172558 (-)	897	WP_010906239.1	RodZ family helix-turn-helix domain-containing protein	-
LLUC77_RS11225 (LLUC77_2220)	yfmH	2172770..2174053 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLUC77_RS11230 (LLUC77_2221)	yfmF	2174043..2175329 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLUC77_RS11235 (LLUC77_2222)	yaaA	2175527..2175889 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
LLUC77_RS11240 (LLUC77_2223)	recF	2175889..2176965 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LLUC77_RS11245 (LLUC77_2224)	-	2177052..2177420 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
LLUC77_RS11250 (LLUC77_2225)	-	2177498..2177875 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
LLUC77_RS11255 (LLUC77_2226)	-	2177888..2178832 (-)	945	WP_010906244.1	alpha/beta hydrolase	-
LLUC77_RS11260 (LLUC77_2227)	galE	2178955..2179935 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=156175 LLUC77_RS11240 WP_010906242.1 2175889..2176965(+) (recF) [Lactococcus lactis subsp. lactis strain UC77]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=156175 LLUC77_RS11240 WP_010906242.1 2175889..2176965(+) (recF) [Lactococcus lactis subsp. lactis strain UC77]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447