Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | RN80_RS04355 | Genome accession | NZ_CP012646 |
| Coordinates | 874218..875450 (+) | Length | 410 a.a. |
| NCBI ID | WP_012972566.1 | Uniprot ID | A0A387B487 |
| Organism | Streptococcus mitis strain KCOM 1350 (= ChDC B183) | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Genomic Context
Location: 869218..880450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RN80_RS04325 (RN80_04335) | - | 869542..870219 (+) | 678 | WP_060627743.1 | DnaD domain-containing protein | - |
| RN80_RS04330 (RN80_04340) | tpiA | 870317..871075 (+) | 759 | WP_060627745.1 | triose-phosphate isomerase | - |
| RN80_RS04335 (RN80_04345) | lytC | 871109..872623 (+) | 1515 | WP_080998499.1 | choline binding-anchored murein hydrolase LytC | - |
| RN80_RS04340 (RN80_04350) | - | 872855..873373 (+) | 519 | WP_000229886.1 | Dps family protein | - |
| RN80_RS04345 (RN80_04355) | - | 873505..874011 (+) | 507 | WP_060627749.1 | dihydrofolate reductase | - |
| RN80_RS04350 (RN80_04360) | - | 874011..874181 (+) | 171 | WP_045612102.1 | hypothetical protein | - |
| RN80_RS04355 (RN80_04365) | clpX | 874218..875450 (+) | 1233 | WP_012972566.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| RN80_RS04360 (RN80_04370) | yihA | 875459..876046 (+) | 588 | WP_000422604.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| RN80_RS04365 (RN80_04375) | - | 876057..876437 (+) | 381 | WP_001140420.1 | RidA family protein | - |
| RN80_RS04370 (RN80_04380) | rapZ | 876489..877379 (+) | 891 | WP_060627751.1 | RNase adapter RapZ | - |
| RN80_RS04375 (RN80_04385) | - | 877376..878353 (+) | 978 | WP_060627753.1 | YvcK family protein | - |
| RN80_RS04380 (RN80_04390) | whiA | 878350..879261 (+) | 912 | WP_060627755.1 | DNA-binding protein WhiA | - |
| RN80_RS04385 (RN80_04395) | - | 879293..880261 (-) | 969 | WP_060627757.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 45681.16 Da Isoelectric Point: 4.4240
>NTDB_id=156016 RN80_RS04355 WP_012972566.1 874218..875450(+) (clpX) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA
Nucleotide
Download Length: 1233 bp
>NTDB_id=156016 RN80_RS04355 WP_012972566.1 874218..875450(+) (clpX) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAGGAAGAAGTACAAAAAATAAT
CGCAGGTAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATTATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTTCCAAAACCAATCGAACTTCTCCATATCTTGAACCACTACGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTAGCTGTTTACAACCATTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCGGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCAATTGCGGATGCGACAGCTCTTACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATTGAACGTGCAGAGCGTGGCATTATCTACGTGGATGAAATTGA
CAAGATTGCTAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACAGTTGCAAGCGTGCCGCCTCAAGGTGGACGTAAACATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGTATTGAAGAAATCGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCTTACATGCAAGAAATTATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCAGTCTTTGCAGCTCTTGAGCAATTGACTGTTGATGACTTGGTTCGT
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAGTACCAAACCTTGCTATCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCTCTTCAAGAGATTGCCAATAAGGCCATTGAACGCAAAACGGGTGCGCGTGGTCTTCGCTCGATTATTGAAG
AAACCATGTTAGATGTCATGTTTGAAGTGCCGAGTCAGGAAAATGTGAAATTGGTCCGTATCACAAAAGAAGCTGTCGAT
GGAACAGATAAACCAATCCTAGAAACAGCCTAG
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAGGAAGAAGTACAAAAAATAAT
CGCAGGTAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATTATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTTCCAAAACCAATCGAACTTCTCCATATCTTGAACCACTACGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTAGCTGTTTACAACCATTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCGGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCAATTGCGGATGCGACAGCTCTTACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATTGAACGTGCAGAGCGTGGCATTATCTACGTGGATGAAATTGA
CAAGATTGCTAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACAGTTGCAAGCGTGCCGCCTCAAGGTGGACGTAAACATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGTATTGAAGAAATCGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCTTACATGCAAGAAATTATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCAGTCTTTGCAGCTCTTGAGCAATTGACTGTTGATGACTTGGTTCGT
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAGTACCAAACCTTGCTATCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCTCTTCAAGAGATTGCCAATAAGGCCATTGAACGCAAAACGGGTGCGCGTGGTCTTCGCTCGATTATTGAAG
AAACCATGTTAGATGTCATGTTTGAAGTGCCGAGTCAGGAAAATGTGAAATTGGTCCGTATCACAAAAGAAGCTGTCGAT
GGAACAGATAAACCAATCCTAGAAACAGCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
87.073 |
100 |
0.871 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
57.463 |
98.049 |
0.563 |