Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RN80_RS00255 Genome accession   NZ_CP012646
Coordinates   41020..41751 (-) Length   243 a.a.
NCBI ID   WP_000889954.1    Uniprot ID   F9HLZ7
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 36020..46751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS10055 (RN80_00225) - 36365..36484 (-) 120 WP_060627126.1 PncF family bacteriocin immunity protein -
  RN80_RS00235 (RN80_00235) - 37187..38536 (-) 1350 WP_060627128.1 sensor histidine kinase -
  RN80_RS00240 (RN80_00240) comE/blpR 38550..39287 (-) 738 WP_060627129.1 response regulator transcription factor Regulator
  RN80_RS00245 (RN80_00245) - 39583..39912 (+) 330 WP_004261043.1 hypothetical protein -
  RN80_RS00250 (RN80_00250) - 39974..41023 (-) 1050 WP_060627130.1 ABC transporter permease -
  RN80_RS00255 (RN80_00255) pptA 41020..41751 (-) 732 WP_000889954.1 ABC transporter ATP-binding protein Regulator
  RN80_RS00260 (RN80_00260) - 41819..42229 (+) 411 WP_001278319.1 HIT family protein -
  RN80_RS00265 (RN80_00265) - 42239..42520 (+) 282 WP_060627131.1 hypothetical protein -
  RN80_RS00270 (RN80_00270) - 42598..43251 (+) 654 WP_060627132.1 hypothetical protein -
  RN80_RS00275 (RN80_00275) dnaJ 43328..44464 (-) 1137 WP_060627133.1 molecular chaperone DnaJ -
  RN80_RS00280 (RN80_00280) - 44738..45370 (-) 633 WP_060627134.1 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27098.58 Da        Isoelectric Point: 4.6989

>NTDB_id=155963 RN80_RS00255 WP_000889954.1 41020..41751(-) (pptA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=155963 RN80_RS00255 WP_000889954.1 41020..41751(-) (pptA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGTTAGAAATTAAAAACCTGACAGGTGGTTATGTTCATGTCCCTGTCTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTCTGATTGGTCTCAATGGTGCTGGGAAATCGACGACTATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGCTTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGATCGAGTAGAACCTTTGTTAAAAATGTTCCGTTTGGACCAGAAATTGGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGTTGGCGATTGCGGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACCCACGTGCTGGATTCAGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAAGGGGAAGTGCGTGCTAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGTTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HLZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment