Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AM586_RS11805 Genome accession   NZ_CP012640
Coordinates   2668167..2669648 (-) Length   493 a.a.
NCBI ID   WP_047821653.1    Uniprot ID   A0A0J1DHU2
Organism   Massilia sp. WG5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2663167..2674648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM586_RS11795 (AM586_24465) - 2663613..2664716 (-) 1104 WP_047821657.1 ribonucleotide-diphosphate reductase subunit beta -
  AM586_RS11800 (AM586_24470) - 2664844..2667753 (-) 2910 WP_047821655.1 ribonucleoside-diphosphate reductase subunit alpha -
  AM586_RS11805 (AM586_24475) pilR 2668167..2669648 (-) 1482 WP_047821653.1 sigma-54 dependent transcriptional regulator Regulator
  AM586_RS11810 (AM586_24480) - 2669685..2671343 (-) 1659 WP_047821651.1 PAS domain-containing sensor histidine kinase -
  AM586_RS11815 (AM586_24485) - 2671349..2671636 (-) 288 WP_047821649.1 PP0621 family protein -
  AM586_RS11820 (AM586_24490) - 2671633..2672436 (-) 804 WP_047821647.1 inner membrane protein YpjD -
  AM586_RS11825 (AM586_24495) - 2672579..2673373 (-) 795 WP_047821645.1 ABC transporter ATP-binding protein -
  AM586_RS11830 (AM586_24500) - 2673376..2674212 (-) 837 WP_047821643.1 ABC transporter permease -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 52137.68 Da        Isoelectric Point: 5.1519

>NTDB_id=155936 AM586_RS11805 WP_047821653.1 2668167..2669648(-) (pilR) [Massilia sp. WG5]
MGSPRILVVDDEADLRELLEITLVKMGLDVDSASTVREARALLGQHGYALVLTDMRLPDGTGLELVREVAGQGRGTPIAV
ITAYGSAENAVIALKAGAFDYVSKPVVLDDLRTMVRSALRLSETPAAQAAQGAGEGGDSRLLGRSQAMQALRAQIGRLAR
SQAPIAINGESGSGKELAAREIHAQSARAGKPFVAVNCGAIPEALMEAEFFGYRKGAFTGATDERDGFFQAANGGTLMLD
EVADLPLAMQVKLLRAIQERRVRKIGATAEEAVDVRIISATHKDLAKLVETGQFRQDLFYRLNVIELTLPPLRERLDDLP
LLTEAILTRLAGPGNARLGAGVQEALRGYAFPGNVRELENVLERALAFANDGVIEAGDLLLKGARLADAGAAPREPAPAG
LAMPASAPVAPAAASVAPPSAVPAEAAPGMPALGAGELPSNLPDYLSQVERDIIQRALQQTQFNRTQAASLLGISVRQLR
YQMQKLDIHAPEP

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=155936 AM586_RS11805 WP_047821653.1 2668167..2669648(-) (pilR) [Massilia sp. WG5]
ATGGGCTCACCCCGCATCCTGGTAGTCGACGACGAAGCTGACCTGCGCGAGCTGCTCGAGATCACCCTGGTCAAGATGGG
CCTGGACGTCGACAGCGCCTCCACCGTGCGCGAAGCGCGCGCGCTGCTCGGCCAGCACGGCTATGCGCTGGTGCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCGCGAGGTCGCCGGCCAGGGGCGCGGCACGCCGATCGCCGTC
ATCACCGCCTATGGCAGCGCCGAGAATGCGGTGATCGCGCTGAAGGCGGGCGCCTTCGACTACGTCTCCAAGCCGGTGGT
GCTGGACGACCTGCGTACGATGGTGCGCTCGGCGCTGCGCCTGTCCGAGACGCCGGCGGCCCAGGCGGCCCAAGGGGCGG
GCGAGGGCGGCGACTCACGCCTGCTCGGCCGTTCGCAGGCGATGCAGGCGCTGCGCGCCCAGATCGGGCGCCTGGCGCGC
TCGCAGGCGCCGATCGCCATCAACGGCGAATCCGGCAGCGGCAAGGAACTGGCGGCGCGCGAGATCCATGCGCAGAGCGC
GCGCGCCGGCAAGCCTTTCGTCGCGGTCAACTGCGGCGCGATTCCCGAAGCGCTGATGGAGGCCGAGTTCTTCGGCTACC
GGAAAGGCGCCTTCACCGGCGCGACCGACGAGCGCGACGGCTTCTTCCAGGCGGCCAACGGCGGCACCCTGATGCTGGAC
GAGGTGGCCGACCTGCCGCTGGCGATGCAGGTGAAACTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGC
CACCGCCGAGGAGGCGGTGGACGTGCGCATCATCAGCGCCACGCACAAGGACCTGGCGAAGCTGGTCGAGACCGGCCAGT
TCCGCCAGGACCTGTTCTACCGCCTGAACGTGATCGAGCTGACCCTGCCGCCGCTGCGCGAGCGCCTCGACGACCTGCCG
CTGCTGACCGAGGCCATCCTGACGCGCCTGGCGGGCCCGGGCAATGCGCGCCTTGGCGCCGGGGTGCAGGAGGCGCTGCG
CGGCTATGCCTTTCCCGGCAACGTGCGCGAACTGGAAAACGTGCTGGAACGCGCGCTCGCCTTTGCCAACGATGGCGTGA
TCGAGGCCGGCGATCTGCTGCTGAAGGGCGCGCGCCTGGCCGACGCCGGCGCCGCGCCGCGCGAACCGGCACCGGCCGGG
CTGGCGATGCCGGCGTCCGCGCCTGTCGCGCCGGCTGCCGCCTCCGTCGCGCCACCGTCCGCCGTGCCGGCCGAGGCGGC
GCCGGGCATGCCCGCGCTGGGCGCCGGCGAGCTGCCCAGCAACCTGCCGGACTACCTGAGCCAGGTCGAGCGCGACATCA
TCCAGCGCGCCCTGCAGCAGACCCAGTTCAACCGCACCCAGGCCGCCAGCCTGCTCGGCATCAGCGTGCGCCAGTTGCGC
TACCAGATGCAGAAGCTGGACATCCATGCGCCGGAGCCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(446-486)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1DHU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54.379

99.594

0.542
  pilR Acinetobacter baumannii strain A118

44.239

98.58

0.436

Multiple sequence alignment