Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLUC08_RS05795 Genome accession   NZ_CP015903
Coordinates   1180560..1181615 (-) Length   351 a.a.
NCBI ID   WP_081199600.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1175560..1186615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS05780 (LLUC08_1118) trmFO 1177248..1178591 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLUC08_RS05785 (LLUC08_1119) xerS 1178636..1179706 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  LLUC08_RS05790 (LLUC08_1120) - 1180189..1180476 (-) 288 WP_081199598.1 hypothetical protein -
  LLUC08_RS05795 (LLUC08_1121) xerS 1180560..1181615 (-) 1056 WP_081199600.1 tyrosine recombinase XerS Machinery gene
  LLUC08_RS05800 (LLUC08_02605) - 1182105..1182329 (+) 225 WP_128192780.1 hypothetical protein -
  LLUC08_RS05805 (LLUC08_1122) - 1182331..1182528 (-) 198 WP_237025787.1 hypothetical protein -
  LLUC08_RS05810 (LLUC08_1123) arsB 1182537..1183574 (-) 1038 WP_081199602.1 ACR3 family arsenite efflux transporter -
  LLUC08_RS05815 (LLUC08_1124) - 1183590..1185251 (-) 1662 WP_081200263.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40791.66 Da        Isoelectric Point: 9.7411

>NTDB_id=155873 LLUC08_RS05795 WP_081199600.1 1180560..1181615(-) (xerS) [Lactococcus lactis subsp. lactis strain UC08]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITSHVNIKEITLKEMENVTKREL
EAFVLHERLRLETKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHEYENSISNRARTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYIKDYFEARSSMKTEVQALFVTDYNQQIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=155873 LLUC08_RS05795 WP_081199600.1 1180560..1181615(-) (xerS) [Lactococcus lactis subsp. lactis strain UC08]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTACTGCCTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAGCCATGTTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGGCTCCGTTTAGAAACAAAATGCGGTTCTAATACACATACATCAGCATTAAACCGTAC
CATTGCTGCAATAAAGAGCCTATATAATTATCTTTGTGAACAAACTGAGGATGAACACGGAAATACATATATGACTCGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAGAGCGAAACCTTGCATTACCGTGCTGCTCAACTAGAAGGGAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAACATGAATACGAAAATTCTATCAGTAATCGTGCAAGAACAAG
TTTCAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCTGAACTTGTAG
GAATCAATCTTAACGATTTAAACCTTGAAACTGGAAAAGTAAGAGTGATGCGAAAAGAAGGCAAGAAGGATGTAGTGCCT
ATTGCTCATTTTTCACATAAATATATAAAAGATTATTTTGAGGCAAGAAGTAGCATGAAGACTGAGGTACAAGCCTTATT
TGTCACAGATTATAACCAACAAATTAGAAAAATTTCTAATGCTTCGATAAACAAGTTGGTTGCAAAGTATTCTGAAGCCT
ATAAAGTCCGTGTGACACCTCATACACTAAGGCATACTTTTGCAACAAGACTTTATAATGTCAGTCATTCACAAGTCCTT
GTCAGCAATCAATTGGGACATTCCTCAACTAAGCCTACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
TTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(178-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.418

99.43

0.462