Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LLUC08_RS01960 Genome accession   NZ_CP015903
Coordinates   388376..389158 (+) Length   260 a.a.
NCBI ID   WP_023188991.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 383376..394158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS01935 (LLUC08_0371) vicX 383401..384213 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLUC08_RS01940 (LLUC08_0372) vicK 384382..385824 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLUC08_RS01945 (LLUC08_0373) yycF 385817..386518 (-) 702 WP_003131580.1 response regulator YycF -
  LLUC08_RS01950 (LLUC08_0374) tmk 386696..387331 (+) 636 WP_012897230.1 dTMP kinase -
  LLUC08_RS01955 (LLUC08_0375) - 387464..388324 (+) 861 WP_081199219.1 DNA polymerase III subunit delta' -
  LLUC08_RS01960 (LLUC08_0376) yaaT 388376..389158 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  LLUC08_RS01965 (LLUC08_0377) yabA 389151..389477 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LLUC08_RS01970 (LLUC08_0378) rsmI 389477..390352 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLUC08_RS01975 (LLUC08_0379) - 390429..390620 (-) 192 WP_012897234.1 hypothetical protein -
  LLUC08_RS01980 (LLUC08_0380) - 391219..391404 (-) 186 WP_081199221.1 hypothetical protein -
  LLUC08_RS01985 (LLUC08_0381) - 391948..392280 (-) 333 WP_081199223.1 hypothetical protein -
  LLUC08_RS01990 (LLUC08_0382) - 392280..392591 (-) 312 WP_058225857.1 hypothetical protein -
  LLUC08_RS01995 (LLUC08_0383) - 392769..393341 (-) 573 WP_128192774.1 hypothetical protein -
  LLUC08_RS02000 (LLUC08_0384) - 393355..393669 (-) 315 WP_081199227.1 hypothetical protein -
  LLUC08_RS02005 (LLUC08_0385) - 393789..393938 (-) 150 WP_153951467.1 hypothetical protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29817.30 Da        Isoelectric Point: 6.0566

>NTDB_id=155850 LLUC08_RS01960 WP_023188991.1 388376..389158(+) (yaaT) [Lactococcus lactis subsp. lactis strain UC08]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLIIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=155850 LLUC08_RS01960 WP_023188991.1 388376..389158(+) (yaaT) [Lactococcus lactis subsp. lactis strain UC08]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCTAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTATCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385