Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LLUC08_RS01935 Genome accession   NZ_CP015903
Coordinates   383401..384213 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 378401..389213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS01910 (LLUC08_0366) ytpR 378627..379253 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LLUC08_RS01915 (LLUC08_0367) nox 379416..380756 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  LLUC08_RS01920 (LLUC08_0368) - 380845..381234 (+) 390 WP_081199217.1 single-stranded DNA-binding protein -
  LLUC08_RS01925 (LLUC08_0369) groES 381354..381638 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLUC08_RS01930 (LLUC08_0370) groL 381727..383355 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LLUC08_RS01935 (LLUC08_0371) vicX 383401..384213 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLUC08_RS01940 (LLUC08_0372) vicK 384382..385824 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLUC08_RS01945 (LLUC08_0373) yycF 385817..386518 (-) 702 WP_003131580.1 response regulator YycF -
  LLUC08_RS01950 (LLUC08_0374) tmk 386696..387331 (+) 636 WP_012897230.1 dTMP kinase -
  LLUC08_RS01955 (LLUC08_0375) - 387464..388324 (+) 861 WP_081199219.1 DNA polymerase III subunit delta' -
  LLUC08_RS01960 (LLUC08_0376) yaaT 388376..389158 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=155847 LLUC08_RS01935 WP_003131583.1 383401..384213(-) (vicX) [Lactococcus lactis subsp. lactis strain UC08]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=155847 LLUC08_RS01935 WP_003131583.1 383401..384213(-) (vicX) [Lactococcus lactis subsp. lactis strain UC08]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685