Detailed information NTG0155808

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLUC06_RS11370
• Genome accession: NZ_CP015902
• Coordinates: 2274791..2275867 (+)
• Length: 358 a.a.
• NCBI ID: WP_081213733.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain UC06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2269791..2280867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC06_RS11345 (LLUC06_2205)	pgsA	2269899..2270471 (-)	573	WP_081213732.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLUC06_RS11350 (LLUC06_2206)	-	2270512..2271408 (-)	897	WP_017865077.1	RodZ family helix-turn-helix domain-containing protein	-
LLUC06_RS11355 (LLUC06_2207)	yfmH	2271672..2272955 (-)	1284	WP_162299547.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLUC06_RS11360 (LLUC06_2208)	yfmF	2272945..2274231 (-)	1287	WP_185280420.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLUC06_RS11365 (LLUC06_2209)	yaaA	2274429..2274791 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
LLUC06_RS11370 (LLUC06_2210)	recF	2274791..2275867 (+)	1077	WP_081213733.1	DNA replication/repair protein RecF	Machinery gene
LLUC06_RS11375 (LLUC06_2211)	-	2275954..2276322 (-)	369	WP_081213734.1	carboxymuconolactone decarboxylase family protein	-
LLUC06_RS11380 (LLUC06_2212)	-	2276400..2276777 (+)	378	WP_015427093.1	MerR family transcriptional regulator	-
LLUC06_RS11385 (LLUC06_2213)	-	2276789..2277733 (-)	945	WP_081213813.1	alpha/beta hydrolase	-
LLUC06_RS11390 (LLUC06_2214)	galE	2277853..2278833 (-)	981	WP_058203748.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41342.20 Da
• Isoelectric Point: 6.8652

>NTDB_id=155808 LLUC06_RS11370 WP_081213733.1 2274791..2275867(+) (recF) [Lactococcus lactis subsp. lactis strain UC06]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEVDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=155808 LLUC06_RS11370 WP_081213733.1 2274791..2275867(+) (recF) [Lactococcus lactis subsp. lactis strain UC06]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGACCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAGTTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	54.722	100	0.55
recF	Bacillus subtilis subsp. subtilis str. 168	45.69	97.207	0.444