Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AMQ28_RS06790 Genome accession   NZ_CP012608
Coordinates   1440236..1441813 (+) Length   525 a.a.
NCBI ID   WP_053578966.1    Uniprot ID   A0A0M4GHG8
Organism   Acinetobacter sp. TTH0-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435236..1446813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS06770 (AMQ28_06775) - 1435700..1437004 (+) 1305 WP_053578962.1 homoserine dehydrogenase -
  AMQ28_RS06775 (AMQ28_06780) thrC 1437075..1438220 (+) 1146 WP_053578963.1 threonine synthase -
  AMQ28_RS06780 (AMQ28_06785) - 1438295..1439347 (-) 1053 WP_053578964.1 serine hydrolase -
  AMQ28_RS06785 (AMQ28_06790) - 1439566..1440201 (+) 636 WP_053578965.1 response regulator -
  AMQ28_RS06790 (AMQ28_06795) pilS 1440236..1441813 (+) 1578 WP_053578966.1 sensor histidine kinase Regulator
  AMQ28_RS06795 (AMQ28_06800) pilR 1441834..1443246 (+) 1413 WP_171250361.1 sigma-54-dependent transcriptional regulator Regulator
  AMQ28_RS06800 (AMQ28_06805) - 1443255..1444382 (-) 1128 WP_416202178.1 S41 family peptidase -
  AMQ28_RS06805 (AMQ28_06810) gpmI 1444472..1446019 (-) 1548 WP_053578969.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 59966.85 Da        Isoelectric Point: 5.8450

>NTDB_id=155754 AMQ28_RS06790 WP_053578966.1 1440236..1441813(+) (pilS) [Acinetobacter sp. TTH0-4]
MIQKNYNFELNQYHLAIWYTTYRLIITTCLLLIFLLTYPSLNADYQYPQFYSYVLMGYVAISFIQLISLKNVKYKIPLQL
TLLFVVDVVALSLMTLALDGPNLHLSLIFVITIFAASVLLDAQKALIITLIAVISVVYQLFLGSLFDLSSLNKIGNSALL
AFLFFMVYGSGQVAVRRFQILENLNFSQSLELKRLQNLNRYILEQIELGYLVLDENCNIVLSNPAACTLLGIAQIYVYDK
YPLIKVQPDLFELLKFDQLKNGEKFQFESQLSLFSIHIEVQKLIVPHQTLTLLVLQDARKLNQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANELFIDSDPEQQRLLSQMIAKQAQRIDRIIQDTLTMVRNKETFPTLIQLNQFISQFIQEDLSDVAT
QIRCTIQSKISIIFDEAQLRQILINLIRNAIRHNSPEYLYIELNIYTHGGHIRIDVRDFGQGVASKDQAYLFQPFFSTEI
TGTGLGLYLSHSFCEANDAKLDYVQQEQGACFQIECLNANLDESL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=155754 AMQ28_RS06790 WP_053578966.1 1440236..1441813(+) (pilS) [Acinetobacter sp. TTH0-4]
ATGATACAAAAAAATTATAATTTTGAGTTAAATCAATACCATTTAGCCATTTGGTATACGACATACAGACTCATCATCAC
GACATGTCTTTTACTGATTTTTTTACTGACCTATCCCAGTTTAAATGCAGATTATCAATATCCCCAATTCTATTCTTATG
TGTTGATGGGGTATGTAGCCATCAGTTTTATCCAACTGATTTCGCTTAAAAATGTAAAATATAAAATACCCCTTCAATTG
ACACTGCTTTTCGTGGTTGATGTGGTCGCTTTAAGTTTAATGACCTTAGCCTTAGATGGCCCCAACCTACATTTAAGCCT
TATTTTTGTCATTACTATTTTTGCCGCTTCCGTATTACTCGATGCCCAAAAAGCGTTGATCATTACCTTAATTGCTGTCA
TTAGTGTGGTTTATCAGCTTTTTTTAGGCAGTTTATTTGATCTGTCCTCCCTCAATAAAATTGGAAACAGCGCTTTATTG
GCTTTTCTATTTTTTATGGTTTATGGCAGTGGCCAAGTCGCCGTAAGACGTTTTCAAATTCTAGAAAATTTAAATTTTTC
TCAGTCTTTAGAATTAAAACGACTACAAAATCTAAATCGCTATATTTTAGAACAAATTGAATTGGGCTATTTAGTGCTGG
ATGAAAACTGCAATATCGTATTGAGTAATCCTGCCGCCTGTACACTATTGGGAATTGCCCAAATTTATGTTTATGACAAA
TATCCGCTCATTAAAGTACAACCTGATTTATTTGAACTACTCAAATTTGATCAGCTTAAAAATGGTGAAAAATTTCAATT
TGAATCGCAACTCAGCCTTTTTTCGATACACATTGAAGTACAAAAATTAATTGTTCCTCATCAAACCCTCACCCTCTTGG
TACTTCAAGATGCACGTAAACTTAATCAAAGAGTTCAACAATTAAAATTAGCCGCATTGGGCCAGTTATCCGCCAGTATT
GCCCATGAAATTCGTAATCCTTTAGCAGCCATCGTTCAGGCCAATGAACTCTTTATTGACAGTGATCCTGAGCAGCAAAG
GCTTTTAAGCCAAATGATTGCGAAACAAGCGCAACGTATAGATCGAATCATACAAGACACCCTAACAATGGTGCGTAATA
AAGAAACTTTTCCGACTCTAATTCAACTCAATCAGTTTATTTCTCAATTTATTCAAGAAGATTTATCCGATGTTGCAACA
CAAATTCGTTGTACCATCCAAAGCAAAATCTCGATTATTTTTGATGAAGCACAACTGCGTCAAATTTTAATTAATTTGAT
TCGCAATGCTATTCGACATAACTCCCCCGAATATCTCTATATTGAACTGAATATTTATACACATGGCGGTCATATTCGTA
TTGATGTGCGCGATTTTGGTCAGGGCGTGGCTTCAAAAGATCAGGCCTATTTATTTCAACCTTTTTTTAGTACCGAAATC
ACAGGAACTGGTTTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATGATGCCAAACTGGACTATGTACAACAAGA
ACAAGGGGCATGTTTTCAAATAGAATGCCTAAATGCCAATTTAGATGAATCTTTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4GHG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.604

96.19

0.573

Multiple sequence alignment