Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AN158_RS16560 | Genome accession | NZ_CP012587 |
| Coordinates | 3557676..3558056 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CA-17 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3552676..3563056
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN158_RS16530 (AN158_16510) | kdsB | 3553579..3554340 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AN158_RS16535 (AN158_16515) | - | 3554352..3555332 (+) | 981 | WP_069371031.1 | DNA polymerase III subunit delta' | - |
| AN158_RS16540 (AN158_16520) | - | 3555344..3555685 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AN158_RS16545 (AN158_16525) | - | 3555703..3556476 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AN158_RS16550 (AN158_16530) | - | 3556514..3557122 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AN158_RS16555 (AN158_16535) | - | 3557132..3557686 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AN158_RS16560 (AN158_16540) | xcpV | 3557676..3558056 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AN158_RS16565 (AN158_16545) | xcpW | 3558056..3558757 (+) | 702 | WP_069371032.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AN158_RS16570 (AN158_16550) | gspK | 3558757..3559716 (+) | 960 | WP_069371033.1 | type II secretion system minor pseudopilin GspK | - |
| AN158_RS16575 (AN158_16555) | - | 3559947..3560543 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AN158_RS16580 (AN158_16560) | ung | 3560594..3561307 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| AN158_RS16585 (AN158_16565) | - | 3561304..3562428 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AN158_RS16590 (AN158_16570) | tadA | 3562435..3562938 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=155585 AN158_RS16560 WP_000836911.1 3557676..3558056(+) (xcpV) [Acinetobacter baumannii strain CA-17]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=155585 AN158_RS16560 WP_000836911.1 3557676..3558056(+) (xcpV) [Acinetobacter baumannii strain CA-17]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |