Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AM599_RS24710 | Genome accession | NZ_CP012585 |
| Coordinates | 5366823..5367695 (+) | Length | 290 a.a. |
| NCBI ID | WP_003116251.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PA_D1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5361823..5372695
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM599_RS24695 (AM599_24695) | - | 5362366..5363064 (-) | 699 | WP_223677410.1 | hypothetical protein | - |
| AM599_RS31510 | - | 5363128..5363667 (-) | 540 | WP_033938465.1 | pilin | - |
| AM599_RS24700 (AM599_24700) | pilB | 5363896..5365599 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AM599_RS24705 (AM599_24705) | pilC | 5365603..5366820 (+) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| AM599_RS24710 (AM599_24710) | pilD | 5366823..5367695 (+) | 873 | WP_003116251.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| AM599_RS24715 (AM599_24715) | coaE | 5367692..5368303 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| AM599_RS24720 (AM599_24720) | yacG | 5368300..5368500 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| AM599_RS24725 (AM599_24725) | - | 5368537..5368746 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| AM599_RS24730 (AM599_24730) | - | 5368852..5369541 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| AM599_RS24735 (AM599_24735) | - | 5369538..5370008 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| AM599_RS24740 (AM599_24740) | - | 5370005..5370430 (-) | 426 | WP_003094666.1 | GNAT family N-acetyltransferase | - |
| AM599_RS24745 (AM599_24745) | - | 5370563..5371192 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| AM599_RS24750 (AM599_24750) | - | 5371189..5371638 (+) | 450 | WP_023100233.1 | MOSC domain-containing protein | - |
| AM599_RS24755 (AM599_24755) | - | 5371664..5371834 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31871.89 Da Isoelectric Point: 7.3454
>NTDB_id=155536 AM599_RS24710 WP_003116251.1 5366823..5367695(+) (pilD) [Pseudomonas aeruginosa strain PA_D1]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=155536 AM599_RS24710 WP_003116251.1 5366823..5367695(+) (pilD) [Pseudomonas aeruginosa strain PA_D1]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |