Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A214_RS06075 Genome accession   NZ_CP015877
Coordinates   1292967..1293641 (+) Length   224 a.a.
NCBI ID   WP_003117160.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa SJTD-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287967..1298641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A214_RS06060 (A214_06060) - 1288513..1291119 (-) 2607 WP_017148678.1 phosphomannomutase/phosphoglucomutase -
  A214_RS06065 (A214_06065) dut 1291156..1291611 (-) 456 WP_003096567.1 dUTP diphosphatase -
  A214_RS06070 (A214_06070) coaBC 1291619..1292827 (-) 1209 WP_017148677.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A214_RS06075 (A214_06075) radC 1292967..1293641 (+) 675 WP_003117160.1 RadC family protein Machinery gene
  A214_RS06080 (A214_06080) - 1293658..1294206 (-) 549 WP_003098290.1 hypothetical protein -
  A214_RS06085 (A214_06085) - 1294232..1295812 (-) 1581 WP_003117158.1 ABC transporter substrate-binding protein -
  A214_RS06090 (A214_06090) rpmB 1296167..1296403 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  A214_RS06095 (A214_06095) rpmG 1296415..1296570 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  A214_RS06100 (A214_06100) - 1296705..1297067 (-) 363 WP_003096551.1 cupin domain-containing protein -
  A214_RS06105 (A214_06105) - 1297133..1298467 (-) 1335 WP_004347287.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24888.65 Da        Isoelectric Point: 7.2089

>NTDB_id=155508 A214_RS06075 WP_003117160.1 1292967..1293641(+) (radC) [Pseudomonas aeruginosa SJTD-1]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVAGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=155508 A214_RS06075 WP_003117160.1 1292967..1293641(+) (radC) [Pseudomonas aeruginosa SJTD-1]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGGCCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment