Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   A8713_RS17605 Genome accession   NZ_CP015849
Coordinates   4084904..4086313 (-) Length   469 a.a.
NCBI ID   WP_064534435.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4079904..4091313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS17580 (A8713_17570) - 4079965..4080597 (-) 633 WP_064534433.1 hypothetical protein -
  A8713_RS17585 (A8713_17575) - 4080654..4081193 (-) 540 WP_018568846.1 SigE family RNA polymerase sigma factor -
  A8713_RS17590 (A8713_17580) - 4081564..4082619 (-) 1056 WP_064534434.1 A/G-specific adenine glycosylase -
  A8713_RS17595 (A8713_17585) - 4082822..4083640 (+) 819 WP_079159025.1 hypothetical protein -
  A8713_RS17600 (A8713_17590) disA 4083687..4084811 (-) 1125 WP_026252689.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  A8713_RS17605 (A8713_17595) radA/sms 4084904..4086313 (-) 1410 WP_064534435.1 DNA repair protein RadA Machinery gene
  A8713_RS17610 (A8713_17600) - 4086511..4088256 (+) 1746 WP_064534436.1 hypothetical protein -
  A8713_RS17615 (A8713_17605) - 4088380..4089177 (-) 798 WP_064534437.1 hypothetical protein -
  A8713_RS17620 (A8713_17610) - 4089333..4090265 (+) 933 WP_064534438.1 Ppx/GppA phosphatase family protein -
  A8713_RS17625 (A8713_17615) - 4090363..4091187 (+) 825 WP_064534439.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49736.93 Da        Isoelectric Point: 8.0106

>NTDB_id=155288 A8713_RS17605 WP_064534435.1 4084904..4086313(-) (radA/sms) [Streptomyces sp. SAT1]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTSPGRVTTSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREPEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=155288 A8713_RS17605 WP_064534435.1 4084904..4086313(-) (radA/sms) [Streptomyces sp. SAT1]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCGGTGCGTACGACCTCGCCGGGCC
GGGTCACCACCTCCGCCCTGCCCATCGGCCAGGTCGACGGGCGGCAGGCGACGGCCCGCACCACCGGCGTGCCCGAGCTG
GACCGGGTGCTGGGCGGGGGTCTCGTGCCCGGCGCCGTGGTCCTGCTCGCCGGTGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCCGCCAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTGGACGACCATCTCTACCTGGCCGCCGAGACCGATCTGGCCGCCGTCCTG
GGGCACCTGGACGCGGTGAAGCCCTCGCTGCTGATCATGGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGATCCCAGCGGACTGTTCCTGACCCGCCGTGCCGAGCCGGTGCCAG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTGGACTCCCAGATC
CCCTCCCCGCGGCGCACCACGTCGGGCCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGAG
GATCAGCGCGCTGGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTGTCCGAGCCCGCCGCCGACCTCG
CCATCGCGCTCGCGCTGGCCTCGGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGGCTCTCCGAGGCGCACCGCCTGGGATTCACGCACGCGCTCGT
ACCGGGCGATCCGGGCAAGGTGCCGCCCGGGATGAAGGTCCTCGAAGTGGCCGACATGGGGGACGCGCTGCGGGTCCTGC
CGCGCTCGCGTCGCCGAGAGGCCCCGCGGGAGCCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407

Multiple sequence alignment