Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A8713_RS16830 Genome accession   NZ_CP015849
Coordinates   3890579..3891238 (+) Length   219 a.a.
NCBI ID   WP_257784429.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3885579..3896238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS16810 (A8713_16800) - 3885610..3886821 (+) 1212 WP_064537545.1 acyltransferase -
  A8713_RS16815 (A8713_16805) - 3886832..3888319 (+) 1488 WP_064534318.1 sensor histidine kinase -
  A8713_RS16820 (A8713_16810) - 3888316..3888990 (+) 675 WP_064534319.1 response regulator transcription factor -
  A8713_RS16825 (A8713_16815) - 3889143..3890531 (+) 1389 WP_064534320.1 histidine kinase -
  A8713_RS16830 (A8713_16820) vraR 3890579..3891238 (+) 660 WP_257784429.1 response regulator transcription factor Regulator
  A8713_RS16835 (A8713_16825) - 3891375..3892607 (+) 1233 WP_064534321.1 cytochrome P450 -
  A8713_RS16840 (A8713_16830) - 3892675..3893535 (-) 861 WP_064534322.1 diacylglycerol kinase family protein -
  A8713_RS16845 (A8713_16835) - 3893731..3895014 (+) 1284 WP_026252719.1 adenylosuccinate synthase -
  A8713_RS16850 (A8713_16840) - 3895146..3895796 (-) 651 WP_064534323.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23619.29 Da        Isoelectric Point: 4.8446

>NTDB_id=155282 A8713_RS16830 WP_257784429.1 3890579..3891238(+) (vraR) [Streptomyces sp. SAT1]
MRVLIADDQMMVREGFSVLLNAMADIEVVGEAVNGREAVRRVRELAPDVVLMDIRMPELNGIEATREIVAADGTAKVLVL
TTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSRMSGPPRPAGGVQAAYGDLTERE
TEVLVLIAQGLSNAEMAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=155282 A8713_RS16830 WP_257784429.1 3890579..3891238(+) (vraR) [Streptomyces sp. SAT1]
ATCCGGGTGCTGATCGCGGACGACCAGATGATGGTGCGGGAGGGTTTCTCGGTCCTGCTCAACGCCATGGCGGACATCGA
GGTCGTCGGCGAGGCCGTCAACGGCCGCGAGGCGGTGCGGCGGGTGCGCGAACTGGCGCCGGACGTGGTGCTCATGGACA
TCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGGGAGATAGTCGCCGCCGACGGCACCGCGAAGGTGCTGGTGCTG
ACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTCAGGGCGGGGGCCTCCGGCTTCCTGCTCAAGGACGCCTCGGC
ACGGCAGCTCGCCGACGGGGTGCGGGTGGTGGCGGCCGGCGAGGCGCTGCTCGCCCCCTCGGTCACCCGGCGGCTGATCA
CGGAGTTCTCCCGGATGTCCGGCCCGCCGCGCCCGGCGGGCGGCGTGCAGGCGGCCTACGGTGACCTGACCGAGCGGGAG
ACGGAGGTGCTGGTGCTGATCGCACAGGGCCTGTCGAACGCGGAGATGGCCGAGCGGCTGGTGGTCGCCGAGTCCACGAT
CAAGACCCATGTGAGCCGGGTCCTGGTGAAGCTGGGCCTCAGGGACCGCACCCAGGCGGCGGTGTTCGCCTACGAAGCCC
GGCTGGTCACACCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.056

98.63

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

99.087

0.411