Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A8713_RS06605 Genome accession   NZ_CP015849
Coordinates   1507904..1508545 (-) Length   213 a.a.
NCBI ID   WP_064532118.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502904..1513545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS06575 (A8713_06565) - 1503272..1503778 (+) 507 WP_064532108.1 HNH endonuclease -
  A8713_RS06580 (A8713_06570) - 1503900..1504883 (-) 984 WP_064532110.1 SPFH domain-containing protein -
  A8713_RS06585 (A8713_06575) - 1505010..1505441 (-) 432 WP_064532112.1 NfeD family protein -
  A8713_RS06590 (A8713_06580) - 1505600..1506397 (-) 798 WP_026252519.1 ABC transporter ATP-binding protein -
  A8713_RS06595 (A8713_06585) - 1506550..1507347 (+) 798 WP_064532114.1 hypothetical protein -
  A8713_RS06600 (A8713_06590) - 1507438..1507683 (-) 246 WP_064532116.1 chaplin -
  A8713_RS06605 (A8713_06595) vraR 1507904..1508545 (-) 642 WP_064532118.1 response regulator transcription factor Regulator
  A8713_RS06610 (A8713_06600) - 1508538..1509683 (-) 1146 WP_064532120.1 GAF domain-containing sensor histidine kinase -
  A8713_RS06615 (A8713_06605) - 1510346..1511086 (+) 741 WP_064532122.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22911.21 Da        Isoelectric Point: 5.3661

>NTDB_id=155257 A8713_RS06605 WP_064532118.1 1507904..1508545(-) (vraR) [Streptomyces sp. SAT1]
MADAIKVLVVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVQRAEELRPDVVLMDVKMPVMDGVEALRRLRELGNAAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEDTGLGQGRGTSLTDREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=155257 A8713_RS06605 WP_064532118.1 1507904..1508545(-) (vraR) [Streptomyces sp. SAT1]
GTGGCTGACGCAATCAAGGTGCTGGTCGTCGACGACCACCAGGTGGTCCGCCGGGGCCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCGAGGTGGTCGGCGAGGCGGCCGACGGCGCCGAGGGCGTGCAGCGGGCCGAGGAGCTGAGACCCGACGTGG
TCCTCATGGACGTCAAGATGCCCGTCATGGACGGCGTCGAGGCGCTGCGCAGGCTGCGCGAGCTGGGCAACGCCGCGCGC
GTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCGGCCCTGCGCGCGGGCGCCGCCGGGTACGTGTACAA
GGACGTGGACCCCGACGCGCTCGCCGGCGCCATCAGATCCGTGCACGCCGGTCACATCCTGCTCCAGCCCGAGGTCGCCG
GCGCCCTGCTGTCCCAGGAGGACACCGGCCTCGGCCAGGGCCGCGGCACCTCCCTCACCGACCGGGAGCGCGAGGTGCTG
GGCCTCATAGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCGCCCTGGTCCTCTCAGAGAAGACCGTCAAGACCCACGT
GTCCAACATCCTGATGAAGCTCGACCTGGCGGACCGCACCCAGGCCGCGCTGTGGGCCGTACGCCACGGTGCGGCCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.238

98.592

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.404