Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JP39_RS11775 | Genome accession | NZ_CP012559 |
| Coordinates | 2642425..2643027 (-) | Length | 200 a.a. |
| NCBI ID | WP_041498931.1 | Uniprot ID | A0A0K2LFA2 |
| Organism | Companilactobacillus heilongjiangensis strain DSM 28069 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2637425..2648027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JP39_RS11750 (JP39_11750) | rplI | 2638643..2639098 (-) | 456 | WP_041498925.1 | 50S ribosomal protein L9 | - |
| JP39_RS11755 (JP39_11755) | - | 2639117..2641120 (-) | 2004 | WP_041498926.1 | DHH family phosphoesterase | - |
| JP39_RS11760 (JP39_11760) | - | 2641220..2641762 (-) | 543 | WP_041498927.1 | DUF3278 domain-containing protein | - |
| JP39_RS11765 (JP39_11765) | - | 2641752..2641952 (-) | 201 | WP_041498928.1 | helix-turn-helix transcriptional regulator | - |
| JP39_RS11770 (JP39_11770) | rpsR | 2642167..2642403 (-) | 237 | WP_041498930.1 | 30S ribosomal protein S18 | - |
| JP39_RS11775 (JP39_11775) | ssb | 2642425..2643027 (-) | 603 | WP_041498931.1 | single-stranded DNA-binding protein | Machinery gene |
| JP39_RS11780 (JP39_11780) | rpsF | 2643065..2643361 (-) | 297 | WP_041498933.1 | 30S ribosomal protein S6 | - |
| JP39_RS11790 (JP39_11790) | gyrA | 2644072..2646645 (-) | 2574 | WP_041498936.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 21937.24 Da Isoelectric Point: 4.7420
>NTDB_id=155183 JP39_RS11775 WP_041498931.1 2642425..2643027(-) (ssb) [Companilactobacillus heilongjiangensis strain DSM 28069]
MINRVVLVGRLTRDPELRYTSSGAAVASFTVAVNRQFTNSQGERDADFIGCTIWRKAAENFVNFTKKGSLVGIDGRIQTS
SYDNQQGQRVYRTDVIVENFSLLESRAESERRDSGSGNNYSNNNQAPSYNNSNQSNQSPVNNNSNNNFNGGNNAPANSGN
YNSNTNNNNNNQSNNNNSSSADPFADNSKPIDISDDDLPF
MINRVVLVGRLTRDPELRYTSSGAAVASFTVAVNRQFTNSQGERDADFIGCTIWRKAAENFVNFTKKGSLVGIDGRIQTS
SYDNQQGQRVYRTDVIVENFSLLESRAESERRDSGSGNNYSNNNQAPSYNNSNQSNQSPVNNNSNNNFNGGNNAPANSGN
YNSNTNNNNNNQSNNNNSSSADPFADNSKPIDISDDDLPF
Nucleotide
Download Length: 603 bp
>NTDB_id=155183 JP39_RS11775 WP_041498931.1 2642425..2643027(-) (ssb) [Companilactobacillus heilongjiangensis strain DSM 28069]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTGAGATATACTTCTAGCGGAGCTGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTCACAAATTCTCAAGGGGAACGTGATGCCGATTTTATCGGTTGTACTATTT
GGAGAAAAGCTGCCGAGAACTTTGTCAACTTCACTAAGAAGGGTTCGCTTGTCGGTATTGATGGACGTATCCAAACGAGT
TCATATGATAATCAACAAGGTCAAAGAGTCTACAGAACGGATGTTATTGTGGAAAACTTCTCCTTGCTTGAATCTCGTGC
TGAAAGTGAAAGACGTGATTCTGGTAGTGGTAATAATTATTCAAATAATAATCAAGCACCTAGCTACAATAATTCTAACC
AATCAAATCAGTCTCCAGTAAATAATAACAGTAATAACAACTTTAACGGTGGCAACAATGCCCCTGCTAATAGTGGTAAT
TACAACAGCAATACAAATAATAATAACAATAATCAATCTAACAATAATAACAGCAGTAGTGCTGATCCATTTGCTGACAA
CAGTAAACCAATTGACATTTCTGATGATGATTTACCATTTTAA
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTGAGATATACTTCTAGCGGAGCTGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTCACAAATTCTCAAGGGGAACGTGATGCCGATTTTATCGGTTGTACTATTT
GGAGAAAAGCTGCCGAGAACTTTGTCAACTTCACTAAGAAGGGTTCGCTTGTCGGTATTGATGGACGTATCCAAACGAGT
TCATATGATAATCAACAAGGTCAAAGAGTCTACAGAACGGATGTTATTGTGGAAAACTTCTCCTTGCTTGAATCTCGTGC
TGAAAGTGAAAGACGTGATTCTGGTAGTGGTAATAATTATTCAAATAATAATCAAGCACCTAGCTACAATAATTCTAACC
AATCAAATCAGTCTCCAGTAAATAATAACAGTAATAACAACTTTAACGGTGGCAACAATGCCCCTGCTAATAGTGGTAAT
TACAACAGCAATACAAATAATAATAACAATAATCAATCTAACAATAATAACAGCAGTAGTGCTGATCCATTTGCTGACAA
CAGTAAACCAATTGACATTTCTGATGATGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.214 |
100 |
0.575 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.5 |