Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CDOMC_RS06555 Genome accession   NZ_CP012552
Coordinates   1234544..1235308 (-) Length   254 a.a.
NCBI ID   WP_172128858.1    Uniprot ID   A0A6G5R4A5
Organism   Campylobacter sp. RM16192     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1229544..1240308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDOMC_RS06525 (CDOMC_1286) hemW 1229779..1230831 (+) 1053 WP_172128853.1 radical SAM family heme chaperone HemW -
  CDOMC_RS06530 (CDOMC_1287) tatB 1230897..1231310 (+) 414 WP_172128854.1 Sec-independent protein translocase protein TatB -
  CDOMC_RS06535 (CDOMC_1288) tatC 1231310..1232113 (+) 804 WP_172128855.1 twin-arginine translocase subunit TatC -
  CDOMC_RS06540 (CDOMC_1289) queA 1232103..1233125 (+) 1023 WP_172129666.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CDOMC_RS06545 (CDOMC_1290) - 1233135..1234172 (+) 1038 WP_172128856.1 hypothetical protein -
  CDOMC_RS06550 (CDOMC_1291) ruvX 1234173..1234547 (-) 375 WP_172128857.1 Holliday junction resolvase RuvX -
  CDOMC_RS06555 (CDOMC_1292) dprA 1234544..1235308 (-) 765 WP_172128858.1 DNA-processing protein DprA Machinery gene
  CDOMC_RS06560 (CDOMC_1293) - 1235305..1236489 (-) 1185 WP_236861289.1 divergent polysaccharide deacetylase family protein -
  CDOMC_RS06565 (CDOMC_1294) ilvC 1236491..1237513 (-) 1023 WP_172128859.1 ketol-acid reductoisomerase -
  CDOMC_RS06570 (CDOMC_1295) - 1237662..1238480 (+) 819 WP_172128860.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 27546.06 Da        Isoelectric Point: 8.7356

>NTDB_id=155134 CDOMC_RS06555 WP_172128858.1 1234544..1235308(-) (dprA) [Campylobacter sp. RM16192]
MNVLSELPPPLNRLKKPPKKLYYRGNLELLKLPMISIVGSRKASVYTKNCVLNLAKTLSNAGVCVVSGAALGVDIKAHEG
AFPNTIAVFGNGLDIVYPRANLKAIEQIYISSLAISEYEPGTVAAAHRFLERNRIVVALSEALVVAQADLRSGSMQSARM
AQELGVKIYVLPQRLNESNGTNELLACGKAELINDFDKFAAKFGSPSSEIKDEILEFCKAGANLDEALAKFGDKIYEYEL
FGKLVISGLRVSLV

Nucleotide


Download         Length: 765 bp        

>NTDB_id=155134 CDOMC_RS06555 WP_172128858.1 1234544..1235308(-) (dprA) [Campylobacter sp. RM16192]
GTGAATGTTTTAAGCGAGCTTCCGCCTCCGTTAAATAGGCTTAAAAAACCGCCTAAAAAGCTTTACTATAGAGGAAATTT
AGAGCTTTTAAAGCTTCCGATGATATCCATAGTTGGTTCAAGAAAGGCAAGCGTATATACTAAAAATTGCGTATTAAATT
TGGCTAAAACCCTCTCAAATGCAGGAGTTTGTGTGGTAAGTGGTGCTGCTCTTGGGGTGGATATCAAGGCTCATGAAGGC
GCTTTCCCAAACACTATAGCCGTCTTTGGAAACGGACTTGACATCGTGTATCCAAGGGCAAATTTAAAAGCCATAGAGCA
AATTTATATCTCTTCGCTTGCAATAAGCGAGTACGAGCCGGGCACTGTTGCCGCTGCGCATAGATTTTTAGAGCGAAACC
GCATAGTCGTGGCACTTAGCGAGGCTTTGGTAGTAGCTCAAGCCGATCTAAGAAGCGGCTCTATGCAGAGTGCAAGGATG
GCGCAGGAGCTTGGAGTAAAAATTTATGTCCTTCCTCAAAGACTAAATGAAAGCAACGGCACAAATGAGCTTTTGGCTTG
CGGTAAGGCTGAACTTATAAATGATTTTGATAAATTTGCCGCTAAATTTGGGAGTCCTTCATCCGAAATAAAAGATGAAA
TTTTAGAATTTTGCAAAGCTGGAGCAAATTTGGACGAGGCTTTAGCAAAATTCGGAGATAAAATTTATGAGTATGAACTC
TTTGGAAAGCTTGTCATATCAGGGCTTAGAGTGAGTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G5R4A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.511

91.732

0.528
  dprA Helicobacter pylori 26695

44.578

98.031

0.437

Multiple sequence alignment