Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CPIN17262_RS06870 Genome accession   NZ_CP012548
Coordinates   1382876..1383655 (-) Length   259 a.a.
NCBI ID   WP_078406219.1    Uniprot ID   -
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1377876..1388655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17262_RS06850 (CPIN17262_1361) lolA 1378643..1379155 (+) 513 WP_078406217.1 LolA-like outer membrane lipoprotein chaperone -
  CPIN17262_RS06855 (CPIN17262_1362) - 1379158..1379667 (-) 510 WP_078406218.1 hypothetical protein -
  CPIN17262_RS06860 (CPIN17262_1363) - 1379670..1380992 (-) 1323 WP_078406330.1 ATP-dependent DNA helicase -
  CPIN17262_RS06865 (CPIN17262_1364) - 1381084..1382358 (+) 1275 WP_153300805.1 SH3 domain-containing C40 family peptidase -
  CPIN17262_RS08350 - 1382789..1382896 (+) 108 WP_228384801.1 M15 family metallopeptidase -
  CPIN17262_RS06870 (CPIN17262_1365) dprA 1382876..1383655 (-) 780 WP_078406219.1 DNA-processing protein DprA Machinery gene
  CPIN17262_RS06875 (CPIN17262_1366) - 1383639..1384913 (-) 1275 WP_078406220.1 divergent polysaccharide deacetylase family protein -
  CPIN17262_RS06880 (CPIN17262_1367) ilvC 1384915..1385937 (-) 1023 WP_078406221.1 ketol-acid reductoisomerase -
  CPIN17262_RS06885 (CPIN17262_1368) - 1386123..1386941 (+) 819 WP_069632961.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28657.14 Da        Isoelectric Point: 7.1850

>NTDB_id=155109 CPIN17262_RS06870 WP_078406219.1 1382876..1383655(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
MDFIDKQELPEALNRLKNPPKKLFYIGDKSLLKLPKIAIVGSRKASVYTKNCVLQLANVLKNHGICVVSGGALGVDILAH
IGAMPNTIGVFANGLDSIYPKTNEKTIREIYKHGLALSEYEPESLPVAYKFIQRNRIVVSLCDAVVIAQADIKSGSMQSA
KMAYELGVPVYVLAQRYNESDGTNYLLANSKAKLIGDFNEFAASFGTTNYIQESTTDEFLEFCKNGVSLQYALDKFGDIV
YEYELNGLIKIENLRVIVI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155109 CPIN17262_RS06870 WP_078406219.1 1382876..1383655(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
ATGGATTTTATAGATAAACAAGAATTGCCAGAGGCATTAAACAGACTTAAAAATCCACCAAAAAAGCTATTTTATATAGG
CGATAAATCCTTACTTAAACTTCCAAAAATAGCAATAGTTGGATCAAGAAAAGCCAGTGTTTATACTAAAAATTGTGTTT
TGCAACTAGCTAATGTGCTTAAAAATCACGGCATTTGTGTTGTTAGTGGTGGGGCTTTGGGGGTTGATATTTTGGCTCAT
ATCGGTGCTATGCCAAATACAATTGGAGTCTTTGCAAATGGCCTTGATTCAATCTATCCAAAAACAAACGAAAAAACTAT
AAGAGAAATTTATAAGCACGGTTTGGCTTTGAGTGAGTATGAGCCTGAGTCTTTGCCAGTGGCATATAAATTTATACAAA
GAAATAGAATAGTAGTCTCTTTGTGTGATGCTGTTGTGATAGCTCAAGCTGATATAAAAAGTGGTTCTATGCAAAGTGCA
AAGATGGCATACGAGCTTGGAGTTCCTGTCTATGTTTTGGCTCAAAGATATAACGAGAGCGACGGCACAAACTATCTTTT
GGCTAATTCAAAAGCAAAACTAATAGGCGATTTTAATGAATTTGCGGCTAGTTTTGGCACCACAAACTATATACAAGAAT
CAACCACAGATGAGTTTTTGGAGTTTTGCAAAAATGGTGTAAGTTTGCAATATGCTTTGGATAAATTCGGTGATATCGTA
TATGAATACGAGCTTAATGGACTTATAAAAATAGAAAATTTAAGAGTTATTGTTATCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.553

90.734

0.568
  dprA Helicobacter pylori 26695

45.882

98.456

0.452

Multiple sequence alignment