Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CPIN17261_RS07630 Genome accession   NZ_CP012547
Coordinates   1490696..1491475 (-) Length   259 a.a.
NCBI ID   WP_078388033.1    Uniprot ID   A0AAX0L951
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1485696..1496475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17261_RS07610 (CPIN17261_1516) lolA 1486462..1486974 (+) 513 WP_078388030.1 LolA-like outer membrane lipoprotein chaperone -
  CPIN17261_RS07615 (CPIN17261_1517) - 1486977..1487486 (-) 510 WP_078388031.1 hypothetical protein -
  CPIN17261_RS07620 (CPIN17261_1518) - 1487489..1488811 (-) 1323 WP_078388032.1 ATP-dependent DNA helicase -
  CPIN17261_RS07625 (CPIN17261_1519) - 1488981..1490177 (+) 1197 WP_153300948.1 SH3 domain-containing C40 family peptidase -
  CPIN17261_RS09195 - 1490635..1490709 (+) 75 WP_233144810.1 M15 family metallopeptidase -
  CPIN17261_RS07630 (CPIN17261_1520) dprA 1490696..1491475 (-) 780 WP_078388033.1 DNA-processing protein DprA Machinery gene
  CPIN17261_RS07635 (CPIN17261_1521) - 1491459..1492730 (-) 1272 WP_069638257.1 divergent polysaccharide deacetylase family protein -
  CPIN17261_RS07640 (CPIN17261_1522) ilvC 1492732..1493754 (-) 1023 WP_069638256.1 ketol-acid reductoisomerase -
  CPIN17261_RS07645 (CPIN17261_1523) - 1493940..1494758 (+) 819 WP_069632961.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28505.03 Da        Isoelectric Point: 8.2949

>NTDB_id=155099 CPIN17261_RS07630 WP_078388033.1 1490696..1491475(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261]
MDFIDKQELPESLNRLKNPPKKLFYIGNKSLLKLPKIAIVGSRKASVYTKNCVLQLSSVLKNHGICVVSGGALGVDILAH
VGAMPNTIGVFANGLDTIYPKTNEKTIREIYKHGLALSEYEPESLPVAYKFIQRNRIVVSLCNAVVIAQADIKSGSMQSA
KMACELGVPVYVLAQRYSESDGTNYLLANSKAKLIGDFNEFAASFGTTNYMQESTTDEFLGFCKNGVSLQYALDKFGDIV
YEYELNGLIKIENLRVIVV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155099 CPIN17261_RS07630 WP_078388033.1 1490696..1491475(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261]
ATGGATTTTATAGATAAACAAGAGTTGCCGGAGTCATTAAACAGACTTAAAAATCCACCTAAAAAGCTATTTTATATAGG
AAACAAATCTTTACTCAAACTTCCAAAAATAGCCATAGTTGGGTCAAGAAAAGCCAGTGTTTATACTAAAAATTGTGTTT
TGCAACTATCTAGTGTGCTTAAAAATCATGGCATTTGTGTTGTTAGTGGTGGGGCTTTGGGAGTTGATATTTTAGCTCAT
GTTGGTGCTATGCCAAATACAATTGGAGTCTTTGCAAATGGCCTTGATACAATCTATCCAAAAACAAACGAAAAAACTAT
AAGAGAAATTTATAAGCACGGTTTGGCTTTGAGTGAGTATGAGCCTGAGTCTTTGCCAGTGGCATATAAATTTATACAAA
GAAATAGAATAGTAGTCTCTTTGTGCAATGCTGTTGTGATAGCTCAAGCTGATATAAAAAGCGGCTCTATGCAAAGTGCA
AAGATGGCATGCGAGCTTGGAGTTCCTGTCTATGTTTTAGCTCAAAGATATAGCGAGAGCGACGGCACAAACTATCTTTT
GGCTAATTCAAAAGCAAAACTAATAGGCGATTTTAATGAATTTGCGGCTAGTTTTGGCACCACAAACTATATGCAAGAAT
CAACCACAGATGAGTTTTTGGGGTTTTGCAAAAATGGTGTAAGTTTGCAATATGCTTTGGATAAATTCGGTGATATTGTA
TATGAATACGAACTTAATGGACTTATAAAAATAGAAAATTTAAGAGTTATTGTTGTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.553

90.734

0.568
  dprA Helicobacter pylori 26695

43.529

98.456

0.429

Multiple sequence alignment