Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CPIN17260_RS07825 Genome accession   NZ_CP012546
Coordinates   1518056..1518835 (-) Length   259 a.a.
NCBI ID   WP_078440838.1    Uniprot ID   -
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1513056..1523835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17260_RS07805 (CPIN17260_1555) lolA 1513825..1514337 (+) 513 WP_069637007.1 LolA-like outer membrane lipoprotein chaperone -
  CPIN17260_RS07810 (CPIN17260_1556) - 1514340..1514846 (-) 507 WP_069632956.1 hypothetical protein -
  CPIN17260_RS07815 (CPIN17260_1557) - 1514849..1516171 (-) 1323 WP_078440944.1 ATP-dependent DNA helicase -
  CPIN17260_RS07820 (CPIN17260_1558) - 1516263..1517537 (+) 1275 WP_099046660.1 SH3 domain-containing C40 family peptidase -
  CPIN17260_RS09500 - 1517825..1517953 (+) 129 WP_250637809.1 M15 family metallopeptidase -
  CPIN17260_RS09505 - 1517995..1518069 (+) 75 WP_233144810.1 M15 family metallopeptidase -
  CPIN17260_RS07825 (CPIN17260_1559) dprA 1518056..1518835 (-) 780 WP_078440838.1 DNA-processing protein DprA Machinery gene
  CPIN17260_RS07830 (CPIN17260_1560) - 1518819..1520090 (-) 1272 WP_078440839.1 divergent polysaccharide deacetylase family protein -
  CPIN17260_RS07835 (CPIN17260_1561) ilvC 1520092..1521114 (-) 1023 WP_069638256.1 ketol-acid reductoisomerase -
  CPIN17260_RS07840 (CPIN17260_1562) - 1521300..1522118 (+) 819 WP_069637001.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28577.07 Da        Isoelectric Point: 8.0846

>NTDB_id=155088 CPIN17260_RS07825 WP_078440838.1 1518056..1518835(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260]
MDFIDKQELPESLNRLKNPPKKLFYIGNKSLLKLPKIAIVGSRKASVYTKNCVLQLASVLKNHGICVVSGGALGVDILAH
IGAMPNTIGVFANGLDSIYPKTNEKTIREIYKHGLALSEYEPESLPVAYKFIQRNRIVVSLCDAVVIAQADIKSGSMQSA
KMAYELGVPVYVLAQRYNESDGTNYLLANSKAKLIGDFNEFAASFGTTNYMQESTTDEFLGFCKNGVSLQYALDKFGDIV
YEYELNGLIKIENLRVIVV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155088 CPIN17260_RS07825 WP_078440838.1 1518056..1518835(-) (dprA) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260]
ATGGATTTTATAGATAAACAAGAGTTGCCGGAGTCATTAAACAGACTTAAAAATCCACCTAAAAAGCTATTTTATATAGG
AAACAAATCTTTACTCAAACTTCCAAAAATAGCCATAGTTGGGTCAAGAAAAGCCAGTGTTTATACTAAAAATTGTGTTT
TGCAACTAGCTAGTGTGCTTAAAAATCATGGCATTTGTGTTGTTAGTGGTGGGGCTTTGGGGGTTGATATTTTGGCTCAT
ATCGGTGCTATGCCAAATACAATTGGAGTCTTTGCAAATGGCCTTGATTCAATCTATCCAAAAACAAACGAAAAAACTAT
AAGAGAAATTTATAAGCACGGTTTGGCTTTGAGTGAGTATGAGCCTGAGTCTTTGCCAGTGGCATATAAATTTATACAAA
GAAATAGAATAGTAGTCTCTTTGTGTGATGCTGTTGTGATAGCTCAAGCTGATATAAAAAGTGGTTCTATGCAAAGTGCA
AAGATGGCATACGAGCTTGGAGTTCCTGTCTATGTTTTGGCTCAAAGATATAACGAGAGCGACGGCACAAACTATCTTTT
GGCTAATTCAAAAGCAAAACTAATAGGCGATTTTAATGAATTTGCGGCTAGTTTTGGCACCACAAACTATATGCAAGAAT
CAACCACAGATGAGTTTTTGGGGTTTTGCAAAAATGGTGTAAGTTTGCAATATGCTTTGGATAAATTCGGTGATATTGTA
TATGAATACGAACTTAATGGACTTATAAAAATAGAAAATTTAAGAGTTATTGTTGTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.979

90.734

0.571
  dprA Helicobacter pylori 26695

44.706

98.456

0.44

Multiple sequence alignment