Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSHOW_RS03830 Genome accession   NZ_CP012544
Coordinates   770663..771430 (+) Length   255 a.a.
NCBI ID   WP_002946430.1    Uniprot ID   -
Organism   Campylobacter showae strain ATCC 51146     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 765663..776430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSHOW_RS03815 (CSHOW_0752) - 767051..767869 (-) 819 WP_002946426.1 HDOD domain-containing protein -
  CSHOW_RS03820 (CSHOW_0753) ilvC 768006..769028 (+) 1023 WP_002946427.1 ketol-acid reductoisomerase -
  CSHOW_RS03825 (CSHOW_0754) - 769029..770666 (+) 1638 WP_002946429.1 divergent polysaccharide deacetylase family protein -
  CSHOW_RS03830 (CSHOW_0755) dprA 770663..771430 (+) 768 WP_002946430.1 DNA-processing protein DprA Machinery gene
  CSHOW_RS03835 (CSHOW_0756) ruvX 771637..772011 (+) 375 WP_002946432.1 Holliday junction resolvase RuvX -
  CSHOW_RS03840 (CSHOW_0757) - 772277..772876 (-) 600 WP_002946433.1 alpha/beta hydrolase family protein -
  CSHOW_RS03845 (CSHOW_0758) - 772926..773354 (-) 429 WP_002946434.1 VOC family protein -
  CSHOW_RS03850 (CSHOW_0759) - 773481..774434 (-) 954 WP_232501985.1 hypothetical protein -
  CSHOW_RS03855 (CSHOW_0760) queA 774506..775534 (-) 1029 WP_002946436.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CSHOW_RS03860 (CSHOW_0761) tatC 775560..776315 (-) 756 WP_002946438.1 twin-arginine translocase subunit TatC -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 27249.51 Da        Isoelectric Point: 8.6242

>NTDB_id=155063 CSHOW_RS03830 WP_002946430.1 770663..771430(+) (dprA) [Campylobacter showae strain ATCC 51146]
MNVLTELPRGLLRLKKPPAKLYFEGNLALLERPMVSIVGSRKASAYTKQCVEALARTLANSGVCVVSGAAIGVDIAAHKG
AFPHTIAVFGNGLNKIYPPSNAKIIKEIYQNALALSEYAPDEPPLAYRFLERNRIAVALSQALVVAQADAKSGSMQSARM
AKELGVPIFTLPQRLGESEGTNELVASGAANLINDFDEFALHFGGKPAPAKEDEVIKFCKNGASLDAALAKFGDKIYEYE
LEGKLRISGLTVFAG

Nucleotide


Download         Length: 768 bp        

>NTDB_id=155063 CSHOW_RS03830 WP_002946430.1 770663..771430(+) (dprA) [Campylobacter showae strain ATCC 51146]
TTGAACGTCTTAACCGAGCTTCCACGCGGCCTTTTGCGTCTTAAAAAGCCGCCGGCAAAGCTATATTTTGAGGGAAATTT
AGCCCTGCTTGAGCGACCGATGGTCTCGATCGTGGGCTCGAGAAAGGCCAGCGCCTATACCAAGCAGTGCGTAGAGGCGC
TGGCTAGGACGCTGGCAAACAGCGGCGTTTGCGTGGTTAGCGGAGCGGCCATCGGCGTGGATATCGCCGCGCACAAGGGG
GCTTTTCCGCATACCATCGCGGTTTTTGGCAACGGACTAAACAAAATCTACCCGCCAAGCAACGCCAAAATCATCAAAGA
GATATATCAAAACGCGCTGGCTCTGAGCGAATACGCCCCCGATGAGCCGCCACTTGCTTATAGATTTTTGGAGCGAAACC
GCATCGCAGTCGCGCTCTCGCAGGCTCTAGTCGTGGCGCAGGCTGACGCTAAAAGCGGCTCGATGCAAAGCGCTCGCATG
GCAAAAGAGCTTGGCGTGCCGATATTTACGCTACCTCAGCGCCTAGGCGAGAGTGAGGGGACAAACGAGCTAGTAGCTAG
CGGTGCGGCAAATTTGATAAACGATTTTGACGAATTTGCGCTTCATTTCGGTGGGAAACCCGCACCTGCGAAAGAGGATG
AGGTGATAAAATTTTGCAAAAACGGCGCGAGTCTCGATGCGGCCTTAGCAAAATTCGGCGATAAAATTTACGAATACGAA
CTAGAAGGTAAGCTGCGAATATCTGGGCTTACGGTATTTGCTGGGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.411

90.588

0.502
  dprA Helicobacter pylori 26695

45.56

100

0.463

Multiple sequence alignment