Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CMUC_RS07665 Genome accession   NZ_CP012542
Coordinates   1399520..1400299 (+) Length   259 a.a.
NCBI ID   WP_171994059.1    Uniprot ID   A0A6G5QHX4
Organism   Campylobacter mucosalis CCUG 21559     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1394520..1405299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMUC_RS07650 (CMUC_1507) - 1396289..1397107 (-) 819 WP_171994056.1 HDOD domain-containing protein -
  CMUC_RS07655 (CMUC_1508) ilvC 1397254..1398276 (+) 1023 WP_171994057.1 ketol-acid reductoisomerase -
  CMUC_RS07660 (CMUC_1509) - 1398280..1399536 (+) 1257 WP_171994058.1 divergent polysaccharide deacetylase family protein -
  CMUC_RS07665 (CMUC_1510) dprA 1399520..1400299 (+) 780 WP_171994059.1 DNA-processing protein DprA Machinery gene
  CMUC_RS07670 (CMUC_1511) ruvX 1400301..1400684 (+) 384 WP_171994060.1 Holliday junction resolvase RuvX -
  CMUC_RS07675 (CMUC_1512) - 1400677..1401135 (-) 459 WP_171994061.1 hypothetical protein -
  CMUC_RS07680 (CMUC_1513) - 1401132..1401836 (-) 705 WP_171994062.1 lysophospholipid acyltransferase family protein -
  CMUC_RS07685 (CMUC_1514) miaB 1401820..1403121 (-) 1302 WP_169752473.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CMUC_RS07690 (CMUC_1515) - 1403118..1403360 (-) 243 WP_034966776.1 HP0268 family nuclease -
  CMUC_RS07695 (CMUC_1516) pseI 1403423..1404436 (-) 1014 WP_171994063.1 pseudaminic acid synthase -
  CMUC_RS07700 (CMUC_1517) - 1404439..1405155 (-) 717 WP_171994064.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28465.94 Da        Isoelectric Point: 9.2620

>NTDB_id=155044 CMUC_RS07665 WP_171994059.1 1399520..1400299(+) (dprA) [Campylobacter mucosalis CCUG 21559]
MNFIDKSELPRELFRLGNPPNGLFYIGNKELLHLPKIAIVGSRKASVYTKNCVNELSKRLKNADVCVVSGGAIGVDIAAH
TAALPYTIGVFANGLDIIYPKSNEKIISEIYKNGLAISEYEPNSTPLRHRFLERNRIVVSLCKALVVAQADLQSGSLQSA
RIANEIGVPLFVLPQRIGESNGTNLLLANKKAGLIADFDEFVAMFVQKTKPQNSQDDKILQFCKNGVSLDKALAKFGNKI
YEYELEGKIEISNLTARSI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155044 CMUC_RS07665 WP_171994059.1 1399520..1400299(+) (dprA) [Campylobacter mucosalis CCUG 21559]
ATGAACTTTATAGATAAATCAGAGCTTCCGCGTGAGCTGTTTCGCTTAGGAAATCCACCAAATGGGCTATTTTACATCGG
AAACAAAGAACTTTTACATCTCCCAAAAATCGCAATAGTTGGCTCACGAAAAGCGAGTGTATATACAAAAAACTGCGTAA
ACGAGCTATCAAAACGGCTTAAAAACGCAGATGTGTGCGTAGTAAGCGGTGGTGCTATCGGCGTTGATATAGCAGCACAC
ACAGCTGCCCTGCCCTACACTATCGGTGTTTTTGCAAACGGACTTGACATAATCTATCCAAAAAGCAACGAAAAAATCAT
ATCTGAAATTTACAAAAACGGACTTGCAATAAGCGAATACGAGCCAAATAGCACGCCACTACGACATAGATTTTTAGAGC
GAAACCGAATAGTCGTGTCGCTGTGCAAGGCACTTGTCGTCGCACAAGCGGATTTACAAAGTGGCTCACTTCAGAGTGCT
AGAATAGCAAATGAAATCGGGGTACCACTCTTTGTCCTGCCTCAACGTATCGGCGAGAGCAATGGCACGAACCTGCTTTT
AGCGAACAAAAAAGCCGGTCTTATTGCCGATTTTGACGAATTTGTAGCAATGTTTGTCCAAAAAACAAAACCACAAAACA
GCCAAGATGACAAGATATTGCAATTTTGTAAAAATGGCGTCAGCCTTGATAAAGCACTGGCAAAATTTGGCAATAAAATC
TATGAATACGAGCTTGAAGGCAAAATTGAGATATCAAATTTAACAGCAAGAAGCATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G5QHX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.515

89.961

0.544
  dprA Helicobacter pylori 26695

42.449

94.595

0.402

Multiple sequence alignment