Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCON33237_RS06705 Genome accession   NZ_CP012541
Coordinates   1309261..1310028 (-) Length   255 a.a.
NCBI ID   WP_054196935.1    Uniprot ID   -
Organism   Campylobacter concisus strain ATCC 33237     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1304261..1315028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCON33237_RS06675 (CCON33237_1319) hemW 1304771..1305817 (+) 1047 WP_054196930.1 radical SAM family heme chaperone HemW -
  CCON33237_RS06680 (CCON33237_1320) tatB 1305885..1306283 (+) 399 WP_054196931.1 Sec-independent protein translocase protein TatB -
  CCON33237_RS06685 (CCON33237_1321) tatC 1306283..1307053 (+) 771 WP_054196932.1 twin-arginine translocase subunit TatC -
  CCON33237_RS06690 (CCON33237_1322) queA 1307046..1308068 (+) 1023 WP_054197419.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCON33237_RS06695 (CCON33237_1323) - 1308065..1308865 (+) 801 WP_054196933.1 hypothetical protein -
  CCON33237_RS06700 (CCON33237_1324) ruvX 1308881..1309264 (-) 384 WP_054196934.1 Holliday junction resolvase RuvX -
  CCON33237_RS06705 (CCON33237_1325) dprA 1309261..1310028 (-) 768 WP_054196935.1 DNA-processing protein DprA Machinery gene
  CCON33237_RS06710 (CCON33237_1326) - 1310025..1311404 (-) 1380 WP_054196936.1 divergent polysaccharide deacetylase family protein -
  CCON33237_RS06715 (CCON33237_1327) ilvC 1311408..1312430 (-) 1023 WP_054196937.1 ketol-acid reductoisomerase -
  CCON33237_RS06720 (CCON33237_1328) - 1312573..1313391 (+) 819 WP_021091523.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 27860.32 Da        Isoelectric Point: 5.1965

>NTDB_id=155031 CCON33237_RS06705 WP_054196935.1 1309261..1310028(-) (dprA) [Campylobacter concisus strain ATCC 33237]
MRLDFIPESLNRLKNPPKQLNFIGDTSLLSLPKIAVVGSRKASVYTKECVTALCAVLKSANICVVSGGAIGVDIAAHKAA
MPRTIGIFASGLDTIYPSQNKAAIKEIYTKALALSEYDEGEPPLAYRFLERNRIVVGLCEALVVAQADLKSGSMQSARLA
NELKIPVYVLPQRMGESDGTIFLLANKKAELIDDYHKFASLFGEVEEQKIDDDVVKFCKDGISLDDALAKFGDIIYEYEL
DGLIEISNLRVKSVL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=155031 CCON33237_RS06705 WP_054196935.1 1309261..1310028(-) (dprA) [Campylobacter concisus strain ATCC 33237]
ATGAGACTTGACTTTATCCCAGAGTCACTAAATAGGCTAAAAAATCCACCAAAGCAGCTAAATTTTATCGGAGATACTTC
GCTTTTATCCTTACCAAAGATCGCAGTTGTTGGCTCAAGAAAGGCAAGTGTTTATACAAAAGAGTGCGTCACAGCACTTT
GCGCAGTACTAAAAAGTGCAAATATCTGTGTGGTAAGTGGTGGAGCAATCGGCGTTGATATCGCAGCTCATAAAGCTGCT
ATGCCACGAACGATTGGCATTTTTGCGAGCGGACTTGATACCATCTATCCAAGCCAAAATAAAGCGGCGATAAAAGAAAT
TTATACCAAAGCCTTGGCTCTTAGTGAGTATGATGAAGGTGAGCCGCCACTTGCTTATAGATTTTTGGAGCGAAACCGCA
TAGTTGTGGGGCTTTGTGAAGCTCTAGTTGTCGCGCAAGCTGATCTTAAAAGTGGCTCGATGCAAAGTGCAAGGCTTGCA
AACGAGCTTAAAATCCCAGTTTATGTACTGCCACAACGCATGGGCGAAAGCGATGGGACAATTTTTTTGCTTGCAAATAA
AAAAGCCGAGCTTATTGATGACTATCATAAATTTGCCTCACTTTTTGGCGAAGTAGAAGAGCAAAAGATAGATGATGATG
TCGTGAAATTTTGCAAAGATGGCATAAGCCTTGATGATGCATTGGCGAAATTTGGTGATATTATCTACGAATATGAGCTT
GATGGGCTTATTGAGATTTCAAATTTAAGAGTAAAAAGCGTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.603

90.98

0.506
  dprA Helicobacter pylori 26695

41.833

98.431

0.412

Multiple sequence alignment