Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A8L39_RS06705 Genome accession   NZ_CP015832
Coordinates   1298097..1298834 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157 strain 180-PT54     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1293097..1303834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS06675 yfiL 1293255..1293620 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  A8L39_RS06680 aroF 1293830..1294900 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A8L39_RS06685 tyrA 1294911..1296032 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A8L39_RS06690 pheA 1296075..1297235 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A8L39_RS33080 pheL 1297334..1297381 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A8L39_RS06695 raiA 1297485..1297826 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A8L39_RS06705 comL 1298097..1298834 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A8L39_RS06710 rluD 1298969..1299949 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A8L39_RS06715 yfiH 1299946..1300677 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  A8L39_RS06720 clpC 1300807..1303380 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=154869 A8L39_RS06705 WP_000197686.1 1298097..1298834(-) (comL) [Escherichia coli O157 strain 180-PT54]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=154869 A8L39_RS06705 WP_000197686.1 1298097..1298834(-) (comL) [Escherichia coli O157 strain 180-PT54]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376