Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   ACN91_RS27295 Genome accession   NZ_CP012483
Coordinates   5331052..5333487 (-) Length   811 a.a.
NCBI ID   WP_000971170.1    Uniprot ID   A0A9W7V441
Organism   Bacillus cereus strain NJ-W     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 5326052..5338487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN91_RS27275 (ACN91_27310) ispD 5326542..5327222 (-) 681 WP_053565450.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN91_RS27280 (ACN91_27315) - 5327239..5328342 (-) 1104 WP_053565451.1 PIN/TRAM domain-containing protein -
  ACN91_RS27285 (ACN91_27320) disA 5328503..5329576 (-) 1074 WP_000392164.1 DNA integrity scanning diadenylate cyclase DisA -
  ACN91_RS27290 (ACN91_27325) radA 5329580..5330956 (-) 1377 WP_053565452.1 DNA repair protein RadA Machinery gene
  ACN91_RS27295 (ACN91_27330) clpC 5331052..5333487 (-) 2436 WP_000971170.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ACN91_RS27300 (ACN91_27335) - 5333510..5334574 (-) 1065 WP_000050836.1 protein arginine kinase -
  ACN91_RS27305 (ACN91_27340) - 5334579..5335127 (-) 549 WP_000128385.1 UvrB/UvrC motif-containing protein -
  ACN91_RS27310 (ACN91_27345) ctsR 5335298..5335759 (-) 462 WP_001244560.1 transcriptional regulator CtsR -

Sequence


Protein


Download         Length: 811 a.a.        Molecular weight: 90540.42 Da        Isoelectric Point: 6.4057

>NTDB_id=154730 ACN91_RS27295 WP_000971170.1 5331052..5333487(-) (clpC) [Bacillus cereus strain NJ-W]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSASNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=154730 ACN91_RS27295 WP_000971170.1 5331052..5333487(-) (clpC) [Bacillus cereus strain NJ-W]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATTCGTATTGGGCATAA
TAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGTGAAGGAATTGCAGCAAAAGCATTAATTGCTCTTG
GATTAAGTCCAGAGAAAGTTCAAAAAGAAGTAGAAGCGTTAATTGGGCGTGGAACAGAAGCTTCTCAAACTGTACATTAT
ACACCTCGTGCTAAAAAGGTTATTGAATTATCTATGGATGAAGCGCGTAAGCTGGGCCATTCTTACGTTGGAACAGAACA
CATTTTACTCGGTTTAATCCGTGAAGGTGAAGGTGTAGCCGCACGTGTTTTAAATAATTTAGGTGTAAGTCTAAATAAAG
CAAGACAACAAGTCTTACAACTTCTTGGAAGTAATGAAGCTAGTTCAGGTCATCAAGGTGGTTCAGCATCAAATGCAAAT
ACACCGACACTTGATAGTTTAGCAAGGGACTTAACAGTTGTTGCGCGTGAAAATCGCTTAGATCCTGTTATTGGACGTGG
TAAAGAAATTCAACGTGTAATTGAGGTATTAAGCCGTAGAACGAAAAACAACCCAGTATTAATTGGTGAGCCTGGTGTAG
GTAAAACGGCAATTGCAGAAGGATTAGCACAGCAAATTGTAAATAATGAAGTTCCTGAAACTTTAAGAGATAAGCGTGTT
ATGACACTAGATATGGGTACAGTGGTAGCTGGAACGAAATATCGCGGTGAATTTGAAGATCGTTTAAAGAAAGTGATGGA
TGAAATTCGCCAAGCAGGCAATATTATTCTATTTATTGATGAGCTTCATACATTAATTGGTGCAGGTGGAGCAGAAGGTG
CAATCGATGCATCGAATATTTTAAAACCATCTTTAGCACGAGGAGAGTTACAATGTATTGGGGCAACAACTTTAGATGAG
TATCGTAAATATATTGAAAAAGACGCGGCTTTAGAAAGACGTTTTCAACCAATTCATGTTGATGAGCCAAGTTTAGAAGA
ATCGATTCAAATCTTGAAAGGTTTACGTGATCGTTATGAGGCGCATCACCGTGTATCTATTACAGATGACGCTATTGATG
CAGCTGTAAAACTTTCAGATCGTTATATTACAGATCGCTTTTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCAAAAGTTCGCTTACGTTCTTATACAACACCACCAAACTTAAAAGAGCTTGAAGTGAAGCTTGAGGAGATTCGAAAAGA
AAAAGATGCAGCTGTACAAAGTCAAGAATTTGAAAAGGCTGCATCCTTACGTGATATGGAGCAACGCTTACGTGAGAAGT
TAGAAGATACAAAACGTCAATGGAAAGAGCAACAAGGAAAAGAAAATTCAGAGGTTACGGTAGAAGATATTGCAAATGTC
GTTTCTACATGGACGCGTATCCCAGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAATTTAGAATCCATTCT
CCATGATCGTTTGATTGGTCAAGATGAAGCAGTAGTAGCTGTAGCAAAAGCTGTTCGTCGTGCAAGAGCAGGATTAAAAG
ATCCGAAGCGCCCAATTGGTTCATTTATTTTCTTAGGGCCAACAGGTGTAGGTAAAACAGAACTTGCAAGAGCACTAGCA
GAATCTATGTTCGGTGATGAAGATGCAATGATTCGCATCGATATGTCAGAATACATGGAGAAGCATTCTACTTCCCGTTT
AGTTGGTTCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAGAAAGTTCGTCGCAAGCCATATTCAG
TTGTCTTATTAGATGAGGTAGAGAAAGCTCATCCGGATGTGTTTAATATTTTACTACAAGTATTAGAAGATGGTCGTTTA
ACAGATTCTAAAGGACGTACAGTTGATTTCCGTAATACGATTGTTATTATGACGTCTAACGTTGGTGCCGAGGCGTTAAA
ACGTAACAAACATCTTGGATTTAATGTACAAGATGAAAGCCGTGATTATTCGGATATGAAAGGTAAAGTAATGGATGAGC
TGAAAAAGGCATTTCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTATTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACTCTTATGGTAAATCAGTTAGTTAATCGCTTAAAAGAACAAGAAATCGAATTGCACTTAACGGAAGG
GGCAATTTCAGCTATTGCAGATAAAGGATTTGATCGTGAGTATGGCGCTCGTCCACTTCGCAGAGCAATTCAGAAACATG
TAGAAGATAGACTATCAGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTAGAAGGAGAA
TCATTTGTCATTCATAGTGCGGAAAAGGTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

85.926

99.877

0.858

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

50.5

98.644

0.498

  clpC Streptococcus thermophilus LMD-9

46.209

100

0.473

  clpC Streptococcus thermophilus LMG 18311

45.718

100

0.467

  clpC Streptococcus mutans UA159

44.762

100

0.464

  clpC Streptococcus pneumoniae D39

46.55

98.274

0.457

  clpC Streptococcus pneumoniae Rx1

46.55

98.274

0.457

  clpC Streptococcus pneumoniae TIGR4

46.25

98.644

0.456

  clpE Streptococcus mutans UA159

53.191

81.134

0.432

  clpE Streptococcus pneumoniae R6

52.55

79.778

0.419

  clpE Streptococcus pneumoniae TIGR4

52.55

79.778

0.419

  clpE Streptococcus pneumoniae Rx1

52.55

79.778

0.419

  clpE Streptococcus pneumoniae D39

52.55

79.778

0.419

  clpC Lactococcus lactis subsp. cremoris KW2

48.98

84.587

0.414


Multiple sequence alignment