Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A7B19_RS32410 Genome accession   NZ_CP015726
Coordinates   7650066..7652279 (+) Length   737 a.a.
NCBI ID   WP_063728252.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7645066..7657279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS32385 - 7645446..7645679 (-) 234 WP_009714774.1 Lrp/AsnC family transcriptional regulator -
  A7B19_RS32390 - 7645817..7646785 (+) 969 WP_009714773.1 thiamine-phosphate kinase -
  A7B19_RS32395 thiD 7646802..7647632 (+) 831 WP_063728531.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  A7B19_RS32400 rpmB 7647825..7648010 (-) 186 WP_009714771.1 50S ribosomal protein L28 -
  A7B19_RS32405 - 7648257..7649969 (+) 1713 WP_063728250.1 DAK2 domain-containing protein -
  A7B19_RS32410 recG 7650066..7652279 (+) 2214 WP_063728252.1 ATP-dependent DNA helicase RecG Machinery gene
  A7B19_RS32415 rsmD 7652407..7652994 (+) 588 WP_009714768.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A7B19_RS32420 coaD 7652991..7653500 (+) 510 WP_079151775.1 pantetheine-phosphate adenylyltransferase -
  A7B19_RS32425 - 7653616..7654776 (+) 1161 WP_063728256.1 ATP synthase F0 subunit B -
  A7B19_RS32430 - 7654960..7655550 (+) 591 WP_039937465.1 YceD family protein -
  A7B19_RS32435 rpmF 7655553..7655726 (+) 174 WP_009714764.1 50S ribosomal protein L32 -
  A7B19_RS32440 rnc 7655746..7656672 (+) 927 WP_063728258.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79536.02 Da        Isoelectric Point: 6.1951

>NTDB_id=154643 A7B19_RS32410 WP_063728252.1 7650066..7652279(+) (recG) [Streptomyces sp. RTd22]
MDCVPVLDEPLKKVLGGNTAKVMAEHLGLHTVGDLLHHYPRRYAERGELTRLADLPLDEHVTVVAQVADARVHKFNSGRG
QRLEVTITDGSGRLQLVFFGKGVHKPRAELLPGSRAMFAGKVSVFNHKRQLAHPEFKLLRADSGSDAVEAFANQLLPLYP
ACKQMESWQIQQAVDTVLGPAGQEDTVLAGLIDPLPESLREGRGLATLPGALRRIHRPRTKADIADARDRLKWDEAFVLQ
VALARRRQADATAPAAPRRPVDGGLLDAFDARLPFTLTDGQKRVSAEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLG
VVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPIASHVVP
AKDKPHFLARTWERVREEVAGGHQAYVVCPRIGDDEDEAKAAKEKSAEDEAEKRPPLAVLDVADKLAAGPLRDLRVEVLH
GRMAPEAKDEVMRRFAAGGVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEAS
PARGRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLAVIEDEEVIAAAREEATAIVTADPELTGYPELRT
ALDALLDKEREEFLDKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=154643 A7B19_RS32410 WP_063728252.1 7650066..7652279(+) (recG) [Streptomyces sp. RTd22]
ATGGACTGCGTGCCCGTGCTGGATGAACCCCTGAAGAAGGTCCTCGGCGGCAACACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACGGTCGGCGACCTGCTGCACCACTACCCGCGGCGGTACGCGGAGCGCGGCGAGCTGACGCGGCTGGCCG
ATCTGCCCCTGGACGAGCATGTGACCGTCGTCGCGCAGGTCGCGGACGCCCGGGTGCACAAGTTCAACAGCGGCCGGGGC
CAGCGGCTGGAGGTCACCATCACCGACGGCAGCGGCCGCCTCCAGCTCGTCTTCTTCGGCAAGGGCGTGCACAAGCCGCG
CGCGGAGCTGCTGCCCGGCAGCCGCGCCATGTTCGCCGGGAAGGTCTCGGTCTTCAACCACAAGCGGCAGCTGGCGCACC
CCGAGTTCAAGCTGCTGCGCGCGGACAGCGGCTCGGACGCCGTGGAGGCGTTCGCCAACCAGCTGCTGCCGCTGTACCCG
GCCTGCAAGCAGATGGAGTCCTGGCAGATCCAGCAGGCCGTCGACACCGTCCTGGGACCGGCGGGCCAGGAGGACACCGT
GCTGGCCGGGCTGATCGACCCGCTGCCCGAGTCCCTCCGGGAGGGCCGCGGGCTGGCCACGCTGCCCGGGGCGCTGCGCC
GCATCCACCGCCCGCGCACCAAGGCCGACATCGCCGACGCGCGTGACCGGCTCAAGTGGGACGAGGCGTTCGTCCTCCAG
GTCGCGCTGGCCCGCCGCCGCCAGGCCGACGCGACGGCGCCCGCCGCGCCCCGCAGACCGGTGGACGGCGGTCTGCTGGA
CGCCTTCGACGCCCGGCTGCCGTTCACCCTCACCGACGGCCAGAAGCGGGTCAGCGCCGAGATCTTCGCCGACCTGGCCA
CCGACCACCCCATGCACCGGCTGCTCCAGGGCGAGGTCGGATCGGGCAAGACGATGGTCGCGCTGCGCGCGATGCTCGGC
GTCGTGGACGCCGGGGGGCAGGCGGCCATGCTCGCGCCGACCGAGGTGCTCGCCCAGCAGCACCACCGTTCGATCACCGA
GATGATGGGCGAGCTGGCCGAGGGAGGCATGCTCGGGGGCGCCGAGCAGGGCACCAAGGTCGTGCTGCTCACCGGCTCCA
TGGGGGCCGCGGCCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACCCATGCCCTG
ATCGAGGACAAGGTCCAGTTCCACGACCTGGGCCTGGTGGTGGTCGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGCGA
CGCCCTGCGCTCCAAGGGCAAGCAGCCGCCGCATCTGCTGGTGATGACGGCCACCCCGATCCCGCGGACCGTCGCGATGA
CCGTCTTCGGCGACCTGGAGACCTCCGTCCTGGACCAGCTGCCGTCCGGCCGCTCCCCGATCGCCTCCCATGTGGTGCCC
GCCAAGGACAAGCCGCACTTCCTGGCCCGCACCTGGGAGCGGGTGCGGGAGGAGGTGGCGGGCGGCCACCAGGCGTATGT
GGTGTGCCCGCGTATCGGGGACGACGAGGACGAGGCGAAGGCGGCGAAGGAGAAGTCCGCCGAGGACGAGGCGGAGAAGC
GCCCGCCGCTCGCGGTCCTCGACGTCGCCGACAAGCTCGCCGCGGGCCCGCTGCGCGATCTGCGGGTGGAGGTGCTGCAC
GGCCGGATGGCGCCGGAGGCCAAGGACGAGGTGATGCGCCGCTTCGCGGCGGGCGGGGTGGACGTGCTGGTCGCCACGAC
CGTCATCGAGGTGGGCGTCAACGTCCCCAACGCCACCGCCATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGC
TGCACCAGCTGCGCGGCCGGGTCGGCCGGGGCTCGGCCCCGGGGCTGTGCCTGCTGGTGACCGAGATGCCCGAGGCGAGC
CCCGCCCGGGGGCGGCTCGGCGCGGTCGCGGCCACCCTCGACGGCTTCGAGCTGTCCCGGATCGACCTGGAGCAGCGCCG
CGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCCTCGCTGCGGGTGCTCGCCGTCATCGAGGACGAGGAGG
TCATCGCCGCCGCCCGCGAGGAGGCCACCGCGATCGTCACGGCGGACCCCGAGCTGACCGGCTACCCGGAGCTGCGCACC
GCGCTGGACGCCCTGCTGGACAAGGAGCGGGAGGAATTCCTCGACAAGGGATGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-174)

DEAD/DEAH box helicase (DEAD)

(299-451)

Helicase conserved C-terminal domain (Helicase_C)

(553-624)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.252

94.708

0.362
  recG Bacillus subtilis subsp. subtilis str. 168

37.151

97.151

0.361