Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AMM49_RS05370 Genome accession   NZ_CP012480
Coordinates   1047964..1048926 (-) Length   320 a.a.
NCBI ID   WP_000735592.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NGBS128     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042964..1053926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMM49_RS05345 (AMM49_05335) dprA 1044172..1045014 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  AMM49_RS05350 (AMM49_05340) - 1045152..1046173 (-) 1022 Protein_968 siderophore ABC transporter substrate-binding protein -
  AMM49_RS05360 (AMM49_05350) - 1046235..1046996 (-) 762 WP_000614758.1 ABC transporter ATP-binding protein -
  AMM49_RS05365 (AMM49_05355) - 1046993..1047967 (-) 975 WP_000588583.1 iron chelate uptake ABC transporter family permease subunit -
  AMM49_RS05370 (AMM49_05360) ceuB 1047964..1048926 (-) 963 WP_000735592.1 ABC transporter permease Machinery gene
  AMM49_RS05375 (AMM49_05365) - 1049166..1049714 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  AMM49_RS05380 (AMM49_05370) - 1049735..1050496 (-) 762 WP_000201092.1 ribonuclease HII -
  AMM49_RS05385 (AMM49_05375) ylqF 1050483..1051334 (-) 852 WP_000201280.1 ribosome biogenesis GTPase YlqF -
  AMM49_RS05390 (AMM49_05380) - 1051610..1052182 (-) 573 WP_001231797.1 L,D-transpeptidase -
  AMM49_RS05395 (AMM49_05385) - 1052384..1053868 (-) 1485 WP_000256021.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34864.00 Da        Isoelectric Point: 8.7207

>NTDB_id=154605 AMM49_RS05370 WP_000735592.1 1047964..1048926(-) (ceuB) [Streptococcus agalactiae strain NGBS128]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLNQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=154605 AMM49_RS05370 WP_000735592.1 1047964..1048926(-) (ceuB) [Streptococcus agalactiae strain NGBS128]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTAATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTAATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATTGCTTCAGGTTTTGCCATTTTAGGATCGCTGCTTTTTGTAACTATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.589

99.688

0.484

Multiple sequence alignment