Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A7B19_RS10900 Genome accession   NZ_CP015726
Coordinates   2821891..2822562 (+) Length   223 a.a.
NCBI ID   WP_107451059.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816891..2827562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS10880 - 2817038..2818573 (-) 1536 WP_063731969.1 aldehyde dehydrogenase (NADP(+)) -
  A7B19_RS10885 - 2818705..2819475 (+) 771 WP_063731971.1 IclR family transcriptional regulator -
  A7B19_RS10890 - 2819604..2820623 (+) 1020 WP_063732549.1 hypothetical protein -
  A7B19_RS10895 - 2820620..2821894 (+) 1275 WP_063731973.1 sensor histidine kinase -
  A7B19_RS10900 vraR 2821891..2822562 (+) 672 WP_107451059.1 response regulator transcription factor Regulator
  A7B19_RS10905 - 2822627..2823607 (+) 981 WP_063731977.1 aldo/keto reductase -
  A7B19_RS10910 - 2823635..2824855 (-) 1221 WP_009718904.1 right-handed parallel beta-helix repeat-containing protein -
  A7B19_RS10915 - 2825139..2826440 (-) 1302 WP_063731978.1 pectate lyase family protein -
  A7B19_RS10920 - 2826482..2827309 (-) 828 WP_063731980.1 rhamnogalacturonan acetylesterase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23795.50 Da        Isoelectric Point: 5.8706

>NTDB_id=154595 A7B19_RS10900 WP_107451059.1 2821891..2822562(+) (vraR) [Streptomyces sp. RTd22]
MTTPPPLRIVLADDERMVRTALRAILSCEPDLEVVGEAGSGAEAVPLVRELRPDIVLMDVRMPDIDGIRATEQILRTVPE
PPRIIVVTTFENDAYVYDALRAGASGFLLKRARADDLVQAVRLVSRSDSLLFPAAVRALAAEHAAAAGGRDAARALRDRL
SEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGFVTPG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=154595 A7B19_RS10900 WP_107451059.1 2821891..2822562(+) (vraR) [Streptomyces sp. RTd22]
GTGACCACGCCGCCGCCCCTGCGCATCGTGCTGGCCGACGACGAGCGGATGGTCCGCACGGCGCTGCGCGCGATCCTGTC
CTGCGAACCGGACCTGGAGGTGGTGGGCGAGGCGGGCAGCGGCGCCGAGGCCGTCCCGCTGGTCCGCGAACTGCGCCCGG
ACATCGTGCTGATGGACGTCCGGATGCCGGACATCGACGGCATCCGCGCCACCGAGCAGATCCTGCGGACCGTGCCGGAG
CCGCCGCGCATCATCGTGGTGACCACCTTCGAGAACGACGCGTACGTGTACGACGCGCTCCGCGCCGGAGCCAGCGGCTT
CCTGCTCAAGCGGGCCCGCGCGGACGACCTCGTCCAGGCGGTACGGCTGGTGTCGCGCAGCGACTCGCTGCTGTTCCCGG
CCGCCGTACGCGCCCTGGCCGCCGAACACGCCGCCGCCGCGGGTGGCCGCGACGCGGCCCGCGCCCTGCGCGACCGGCTC
TCCGAGCGGGAGGCCGACGTACTGCGGCTGATGGCCGCCGGGCTGTCCAACGCCGAGATCGCCGCCCGGCTGACCGTCGG
CCCGGCTACCGTCAAGACGCATGTCGCCGCGGTCCTCGGCAAGCTCGGCGTCCGGGACCGCACCCAGGCGGTGATCGCGG
CGTACGAATGCGGTTTCGTCACTCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-122)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.93

96.413

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.368