Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AMM49_RS03700 Genome accession   NZ_CP012480
Coordinates   684039..684848 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain NGBS128     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 679039..689848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMM49_RS03675 (AMM49_03660) - 679368..680063 (-) 696 WP_000173638.1 amino acid ABC transporter permease -
  AMM49_RS03680 (AMM49_03665) - 680076..680876 (-) 801 WP_000946173.1 transporter substrate-binding domain-containing protein -
  AMM49_RS03685 (AMM49_03670) - 680888..681643 (-) 756 WP_000053146.1 amino acid ABC transporter ATP-binding protein -
  AMM49_RS03690 (AMM49_03675) vicR 681983..682693 (+) 711 WP_000722052.1 response regulator YycF Regulator
  AMM49_RS03695 (AMM49_03680) vicK 682686..684035 (+) 1350 WP_001065465.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AMM49_RS03700 (AMM49_03685) vicX 684039..684848 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  AMM49_RS03705 (AMM49_03690) - 684851..685219 (+) 369 WP_000719384.1 YbaN family protein -
  AMM49_RS03710 (AMM49_03695) rnc 685394..686080 (+) 687 WP_000661526.1 ribonuclease III -
  AMM49_RS03715 (AMM49_03700) smc 686088..689627 (+) 3540 WP_000478786.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=154594 AMM49_RS03700 WP_001289498.1 684039..684848(+) (vicX) [Streptococcus agalactiae strain NGBS128]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=154594 AMM49_RS03700 WP_001289498.1 684039..684848(+) (vicX) [Streptococcus agalactiae strain NGBS128]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment