Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   AMM49_RS01080 Genome accession   NZ_CP012480
Coordinates   171292..172341 (+) Length   349 a.a.
NCBI ID   WP_000410289.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NGBS128     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 166292..177341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMM49_RS01065 (AMM49_01060) - 167551..169209 (+) 1659 WP_001118750.1 peptide ABC transporter substrate-binding protein -
  AMM49_RS01070 (AMM49_01065) - 169324..170238 (+) 915 WP_000598967.1 ABC transporter permease -
  AMM49_RS01075 (AMM49_01070) - 170248..171279 (+) 1032 WP_000764053.1 ABC transporter permease -
  AMM49_RS01080 (AMM49_01075) oppD 171292..172341 (+) 1050 WP_000410289.1 ABC transporter ATP-binding protein Regulator
  AMM49_RS01085 (AMM49_01080) amiF 172338..173270 (+) 933 WP_000138503.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38886.38 Da        Isoelectric Point: 4.7679

>NTDB_id=154576 AMM49_RS01080 WP_000410289.1 171292..172341(+) (oppD) [Streptococcus agalactiae strain NGBS128]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTETESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKAQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=154576 AMM49_RS01080 WP_000410289.1 171292..172341(+) (oppD) [Streptococcus agalactiae strain NGBS128]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGTATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTAAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGAAACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCCAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.427

0.785
  amiE Streptococcus salivarius strain HSISS4

55.162

97.135

0.536
  amiE Streptococcus thermophilus LMG 18311

54.572

97.135

0.53
  amiE Streptococcus thermophilus LMD-9

54.572

97.135

0.53

Multiple sequence alignment