Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DB29_RS19560 Genome accession   NZ_CP012475
Coordinates   3983422..3984474 (+) Length   350 a.a.
NCBI ID   WP_011247042.1    Uniprot ID   Q5WFX1
Organism   Shouchella clausii strain ENTPro     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3978422..3989474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB29_RS19540 (DB29_04075) - 3978690..3979580 (+) 891 WP_011247046.1 RodZ domain-containing protein -
  DB29_RS19545 (DB29_04076) pgsA 3979736..3980314 (+) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DB29_RS19550 (DB29_04077) cinA 3980343..3981581 (+) 1239 WP_035201712.1 competence/damage-inducible protein A Machinery gene
  DB29_RS19555 (DB29_04078) - 3981578..3983191 (+) 1614 WP_011247043.1 DEAD/DEAH box helicase -
  DB29_RS19560 (DB29_04079) recA 3983422..3984474 (+) 1053 WP_011247042.1 recombinase RecA Machinery gene
  DB29_RS19565 (DB29_04080) - 3984667..3985659 (+) 993 WP_011247041.1 metallophosphoesterase -
  DB29_RS19570 (DB29_04081) - 3985646..3987082 (+) 1437 WP_051881091.1 AAA family ATPase -
  DB29_RS19575 (DB29_04082) - 3987079..3987333 (+) 255 WP_011247039.1 hypothetical protein -
  DB29_RS19580 (DB29_04083) - 3987323..3987985 (+) 663 WP_035201414.1 ATPase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37985.28 Da        Isoelectric Point: 5.2211

>NTDB_id=154565 DB29_RS19560 WP_011247042.1 3983422..3984474(+) (recA) [Shouchella clausii strain ENTPro]
MSDRKQALDMALRHIEKQFGKGSIMKLGEQAEQRVSTVSSGTLALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEIVGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYKGDRLGQGRENSKQFLKENPEITAEIERL
IRDHHGLDGEAKLEEAAEEQAFEDVPLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=154565 DB29_RS19560 WP_011247042.1 3983422..3984474(+) (recA) [Shouchella clausii strain ENTPro]
ATGAGTGATAGAAAACAAGCGCTTGACATGGCTTTACGCCATATTGAAAAACAATTTGGCAAAGGCTCTATTATGAAGCT
AGGTGAACAGGCTGAACAGCGCGTATCGACGGTATCAAGCGGCACCCTCGCCCTTGATATTGCTTTGGGCGTAGGTGGCT
ATCCAAAAGGAAGAGTCATTGAAGTATATGGACCAGAATCTTCCGGTAAAACAACCGTTGCTCTCCATGCAATTGCTGAA
GTGCAGCGCAATGGTGGCCAAGCCGCTTTTATTGATGCTGAGCATGCCCTGGATCCTGTCTATGCGAGCAAACTAGGCGT
TAATATCGATGAACTCTTGCTGTCCCAACCTGATACAGGCGAACAGGCACTTGAAATTGCGGAAGCACTTGTGCGCAGCG
GTGCCCTTGATATCATTGTCATTGATAGTGTAGCTGCGCTTGTACCAAAAGCGGAAATTGAAGGGGAAATGGGCGACTCG
CATGTCGGCTTGCAAGCACGTTTAATGTCACAAGCGCTACGGAAATTATCCGGAGCGATCAATAAGTCGAAAACGATTGC
GATCTTCATCAACCAAATCCGTGAAAAAGTCGGCGTTATGTTCGGCAATCCAGAAACGACGCCAGGGGGACGCGCCCTTA
AATTTTACTCGTCCGTCCGCTTGGAAGTGCGCCGTGCCGAGGCGTTAAAGCAAGGGAATGAGATTGTCGGCAACCGAACC
AAAATCAAAGTCGTCAAAAACAAAGTCGCTCCGCCTTTCCGTTTAGCGGAAGTCGACATTATGTACGGAGAAGGTATTTC
CAGGGAAGGTTCGATGCTTGACATTGCCTCGGAACTCGACATTGTCGAAAAAAGCGGTGCTTGGTATTCTTACAAAGGCG
ACCGCCTCGGGCAAGGCCGCGAGAATTCAAAACAATTTTTGAAGGAAAACCCGGAAATTACAGCCGAAATTGAGCGTTTG
ATTCGTGACCACCACGGGCTCGACGGGGAAGCGAAGCTGGAAGAGGCAGCTGAAGAACAAGCTTTTGAAGATGTGCCTTT
AGATTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WFX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

93.714

0.789
  recA Streptococcus pneumoniae TIGR4

67.403

100

0.697
  recA Streptococcus pneumoniae Rx1

67.403

100

0.697
  recA Streptococcus pneumoniae D39

67.403

100

0.697
  recA Streptococcus pneumoniae R6

67.403

100

0.697
  recA Streptococcus mitis NCTC 12261

68.156

100

0.697
  recA Streptococcus mitis SK321

67.877

100

0.694
  recA Latilactobacillus sakei subsp. sakei 23K

72.308

92.857

0.671
  recA Streptococcus mutans UA159

68.843

96.286

0.663
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Lactococcus lactis subsp. cremoris KW2

67.879

94.286

0.64
  recA Ralstonia pseudosolanacearum GMI1000

66.361

93.429

0.62
  recA Vibrio cholerae strain A1552

61.782

99.429

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.782

99.429

0.614
  recA Neisseria gonorrhoeae MS11

65.138

93.429

0.609
  recA Neisseria gonorrhoeae MS11

65.138

93.429

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.138

93.429

0.609
  recA Acinetobacter baumannii D1279779

62.242

96.857

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.024

93.714

0.6
  recA Acinetobacter baylyi ADP1

64.308

92.857

0.597
  recA Glaesserella parasuis strain SC1401

64.688

91.429

0.591
  recA Pseudomonas stutzeri DSM 10701

64.688

91.429

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

93.429

0.571
  recA Helicobacter pylori strain NCTC11637

61.231

92.857

0.569
  recA Helicobacter pylori 26695

60.923

92.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

90.286

0.549

Multiple sequence alignment