Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A7327_RS00690 Genome accession   NZ_CP015646
Coordinates   146518..147630 (+) Length   370 a.a.
NCBI ID   WP_000775115.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-02300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 141518..152630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7327_RS00665 (A7327_00660) rnpA 141781..142134 (-) 354 WP_001789343.1 ribonuclease P protein component -
  A7327_RS00670 (A7327_00665) rpmH 142255..142392 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  A7327_RS00675 (A7327_00670) dnaA 143123..144484 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  A7327_RS00680 (A7327_00675) dnaN 144762..145895 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  A7327_RS00685 (A7327_00680) yaaA 146276..146521 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  A7327_RS00690 (A7327_00685) recF 146518..147630 (+) 1113 WP_000775115.1 DNA replication/repair protein RecF Machinery gene
  A7327_RS00695 (A7327_00690) gyrB 147640..149574 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  A7327_RS00700 (A7327_00695) gyrA 149611..152265 (+) 2655 WP_000819082.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4362

>NTDB_id=154492 A7327_RS00690 WP_000775115.1 146518..147630(+) (recF) [Staphylococcus aureus strain 08-02300]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPVLLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=154492 A7327_RS00690 WP_000775115.1 146518..147630(+) (recF) [Staphylococcus aureus strain 08-02300]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTTAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCGTCTTATTATTAGATGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495