Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   A7319_RS07915 Genome accession   NZ_CP015638
Coordinates   1757261..1757593 (-) Length   110 a.a.
NCBI ID   WP_069075532.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain L111     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1752261..1762593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7319_RS07885 (A7319_07880) kdpF 1752878..1752967 (-) 90 WP_003218754.1 K(+)-transporting ATPase subunit F -
  A7319_RS07890 (A7319_07885) eat 1753373..1754737 (+) 1365 WP_024074180.1 ethanolamine permease -
  A7319_RS07895 - 1754849..1755016 (+) 168 WP_012722955.1 DUF2897 family protein -
  A7319_RS07900 (A7319_07890) - 1755025..1755873 (-) 849 WP_069075533.1 urea carboxylase-associated family protein -
  A7319_RS07905 (A7319_07895) - 1755889..1756533 (-) 645 WP_069077376.1 GntR family transcriptional regulator -
  A7319_RS07910 (A7319_07900) - 1756668..1757246 (+) 579 WP_024074177.1 TetR/AcrR family transcriptional regulator -
  A7319_RS07915 (A7319_07905) comEA/comE1 1757261..1757593 (-) 333 WP_069075532.1 ComEA family DNA-binding protein Machinery gene
  A7319_RS07920 (A7319_07910) - 1757703..1759697 (-) 1995 WP_069077375.1 polysaccharide biosynthesis protein -
  A7319_RS07925 (A7319_07915) - 1759810..1760829 (-) 1020 WP_069075531.1 MraY family glycosyltransferase -
  A7319_RS07930 (A7319_07920) - 1760867..1761835 (-) 969 WP_069075530.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11829.74 Da        Isoelectric Point: 8.5180

>NTDB_id=154332 A7319_RS07915 WP_069075532.1 1757261..1757593(-) (comEA/comE1) [Pseudomonas fluorescens strain L111]
MQNIYLTSLIFAFLTTLSVTTTAAPSIKPEPPTPMAAQMVQVEQAAKVNLNAADAETLRRDLFGIGAAKAKAIIAYRESN
GPFAAVDELLEVKGIGKALLEKNRERLSIN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=154332 A7319_RS07915 WP_069075532.1 1757261..1757593(-) (comEA/comE1) [Pseudomonas fluorescens strain L111]
ATGCAAAATATCTACCTTACTTCCCTAATCTTCGCCTTCCTCACCACGCTCTCCGTCACCACCACCGCTGCCCCGTCGAT
CAAACCCGAACCCCCAACCCCCATGGCGGCGCAGATGGTGCAGGTCGAGCAAGCCGCCAAGGTCAACCTGAATGCCGCCG
ACGCCGAAACCCTGCGTCGTGATCTCTTCGGCATCGGTGCCGCCAAGGCCAAGGCGATCATTGCCTACCGCGAAAGCAAC
GGGCCGTTCGCGGCGGTGGATGAGTTACTGGAGGTAAAGGGCATCGGCAAGGCGCTGTTGGAGAAGAACCGCGAGAGGCT
CTCGATCAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

44.954

99.091

0.445
  comE1/comEA Haemophilus influenzae Rd KW20

44.681

85.455

0.382