Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A7317_RS27500 Genome accession   NZ_CP015637
Coordinates   6143594..6143959 (+) Length   121 a.a.
NCBI ID   WP_014720320.1    Uniprot ID   A0A0J8G142
Organism   Pseudomonas fluorescens strain L321     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6138594..6148959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS27470 (A7317_27440) pyrR 6139286..6139792 (-) 507 WP_024077900.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  A7317_RS27475 (A7317_27445) ruvX 6139876..6140313 (-) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  A7317_RS27480 (A7317_27450) - 6140313..6140882 (-) 570 WP_069077200.1 YqgE/AlgH family protein -
  A7317_RS27485 (A7317_27455) - 6140964..6141869 (-) 906 WP_024077898.1 TonB family protein -
  A7317_RS27490 (A7317_27460) gshB 6141947..6142900 (-) 954 WP_069077201.1 glutathione synthase -
  A7317_RS27495 (A7317_27465) pilG 6143140..6143547 (+) 408 WP_010564379.1 twitching motility response regulator PilG Regulator
  A7317_RS27500 (A7317_27470) pilH 6143594..6143959 (+) 366 WP_014720320.1 twitching motility response regulator PilH Machinery gene
  A7317_RS27505 (A7317_27475) - 6143972..6144496 (+) 525 WP_024077896.1 chemotaxis protein CheW -
  A7317_RS27510 (A7317_27480) - 6144493..6146544 (+) 2052 WP_024077895.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13227.23 Da        Isoelectric Point: 4.9105

>NTDB_id=154291 A7317_RS27500 WP_014720320.1 6143594..6143959(+) (pilH) [Pseudomonas fluorescens strain L321]
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLSKEPETNGIPIII
ITTKDQETDKIWGARQGAKDYLTKPVDEETLIATLNKVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=154291 A7317_RS27500 WP_014720320.1 6143594..6143959(+) (pilH) [Pseudomonas fluorescens strain L321]
ATGGCACGCGTTCTGATCGTCGACGATTCGCCGACTGAAATGTACAAACTGACCGGTATGCTGGAAAAGCACGGCCACCA
GGTCCTCAAGGCCGAAAACGGCGCAGACGGTGTGGCCCTGGCTCGCCAGGAAAAGCCCGACGCGGTCCTGATGGACATCG
TGATGCCGGGCCTCAATGGTTTCCAGGCGACCCGCCAGCTGTCCAAGGAGCCGGAAACCAACGGTATTCCGATCATCATC
ATCACCACCAAGGACCAGGAGACCGACAAGATCTGGGGCGCGCGCCAAGGCGCCAAGGACTACCTGACCAAGCCGGTGGA
TGAAGAAACCCTGATCGCCACACTGAACAAGGTGTTGGCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8G142

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment