Detailed information NTG0154254

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A7317_RS17970
• Genome accession: NZ_CP015637
• Coordinates: 4078350..4080620 (+)
• Length: 756 a.a.
• NCBI ID: WP_024076164.1
• Uniprot ID: A0ACA7P970
• Organism: Pseudomonas fluorescens strain L321
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4073350..4085620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7317_RS17950 (A7317_17935)	-	4073382..4075607 (-)	2226	WP_024076167.1	NADP-dependent isocitrate dehydrogenase	-
A7317_RS17955 (A7317_17940)	icd	4076101..4077357 (+)	1257	WP_024076166.1	NADP-dependent isocitrate dehydrogenase	-
A7317_RS17960 (A7317_17945)	cspD	4077449..4077727 (-)	279	WP_024076165.1	cold shock domain-containing protein CspD	-
A7317_RS17965 (A7317_17950)	clpS	4077952..4078320 (+)	369	WP_010567912.1	ATP-dependent Clp protease adapter ClpS	-
A7317_RS17970 (A7317_17955)	clpC	4078350..4080620 (+)	2271	WP_024076164.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
A7317_RS17975 (A7317_17960)	infA	4080804..4081022 (-)	219	WP_002553999.1	translation initiation factor IF-1	-
A7317_RS17980 (A7317_17965)	-	4081123..4081830 (-)	708	WP_069076502.1	arginyltransferase	-
A7317_RS17985 (A7317_17970)	aat	4081886..4082566 (-)	681	WP_069076503.1	leucyl/phenylalanyl-tRNA--protein transferase	-
A7317_RS17990 (A7317_17975)	ftsK	4083064..4085469 (+)	2406	WP_024076161.1	DNA translocase FtsK	-

Sequence

Protein

• Length: 756 a.a.
• Molecular weight: 83305.84 Da
• Isoelectric Point: 5.9018

>NTDB_id=154254 A7317_RS17970 WP_024076164.1 4078350..4080620(+) (clpC) [Pseudomonas fluorescens strain L321]
MLNRELEVTLNLAFKEARSKRHEFMTVEHLLLALLDNEAAATVLRACGANLDKLKHDLQEFIDSTTPLIPVHDEDRETQP
TLGFQRVLQRAVFHVQSSGKREVTGANVLVAIFSEQESQAVFLLKQQSVARIDVVNYIAHGISKVPGHGDHSEGEQEMQD
DEGGESSSSGNPLDAYASNLNELARQGRIDPLVGRELEVERVAQILARRRKNNPLLVGEAGVGKTAIAEGLAKRIVDNQV
PDLLANSVVYSLDLGALLAGTKYRGDFEKRFKALLGELKKRPQAILFIDEIHTIIGAGAASGGVMDASNLLKPLLSSGDI
RCIGSTTFQEFRGIFEKDRALARRFQKVDVSEPSVEDTIGILRGLKGRFEAHHGIEYTDEALRAAAELASRYINDRHMPD
KAIDVIDEAGAYQRLQPVEKRVKRIDVAQVEDIVAKIARIPPKHVTSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIKL
SRAGLKSPDKPVGSFLFAGPTGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQ
PHCVLLLDEIEKAHPEVFNLLLQVMDHGTLTDNNGRKADFRNVIVIMTTNAGAETAARASIGFTHQDHSSDAMEVIKKSF
TPEFRNRLDTIIQFGRLSHEVIKSVVDKFLTELQAQLEDKRVQLDVTDAARNWLAEGGYDAAMGARPMARLIQDKIKRPL
AEEILFGELSDHGGVVHIDLKDGELTFEFETTAEMA

Nucleotide

• Length: 2271 bp

>NTDB_id=154254 A7317_RS17970 WP_024076164.1 4078350..4080620(+) (clpC) [Pseudomonas fluorescens strain L321]
ATGTTAAACCGCGAGCTCGAAGTCACCCTCAATCTTGCCTTCAAGGAGGCTCGTTCGAAGCGTCATGAATTCATGACCGT
CGAGCACCTGCTGCTGGCACTTTTGGATAACGAAGCTGCCGCCACCGTATTGCGTGCGTGCGGCGCCAACCTCGACAAAC
TCAAGCATGACCTGCAGGAGTTTATCGACTCCACCACGCCACTGATCCCCGTGCATGACGAGGACCGCGAAACCCAGCCA
ACCCTGGGCTTCCAGCGGGTGTTGCAGCGTGCTGTTTTCCACGTACAGAGCTCCGGCAAGCGTGAAGTCACGGGCGCCAA
CGTGCTTGTGGCGATCTTCAGCGAACAGGAAAGCCAGGCGGTATTCCTGCTCAAGCAACAGAGCGTTGCCCGTATTGATG
TCGTCAACTATATCGCCCACGGTATCTCCAAGGTGCCTGGGCACGGCGATCATTCCGAGGGTGAGCAGGAAATGCAGGAT
GACGAGGGCGGTGAGTCTTCTTCTTCGGGCAATCCACTGGATGCCTATGCCAGCAACCTCAATGAATTGGCGCGCCAGGG
GCGGATCGATCCGCTGGTAGGGCGTGAGCTTGAGGTGGAGCGTGTCGCGCAGATCCTCGCGCGCCGTCGCAAGAACAACC
CGCTGCTGGTGGGTGAGGCGGGTGTCGGTAAAACCGCGATCGCCGAAGGCCTGGCCAAGCGCATCGTCGATAACCAGGTG
CCAGACCTGCTGGCCAACAGCGTTGTCTATTCACTGGACCTGGGCGCGTTGCTCGCGGGCACCAAGTACCGTGGCGATTT
CGAGAAGCGCTTCAAGGCTTTGCTTGGCGAATTGAAAAAACGCCCGCAGGCGATCCTGTTCATTGATGAGATCCACACGA
TCATTGGTGCCGGTGCGGCGTCCGGTGGGGTGATGGATGCGTCCAACCTGCTCAAGCCTCTGCTGTCGTCGGGTGACATT
CGCTGCATCGGTTCGACCACGTTCCAGGAATTCCGTGGGATCTTCGAGAAAGATCGCGCACTGGCGCGTCGCTTCCAGAA
AGTCGACGTATCCGAGCCTTCGGTTGAAGACACCATCGGCATCCTGCGCGGGCTCAAGGGGCGTTTCGAGGCGCACCACG
GCATCGAGTACACCGATGAAGCATTGCGGGCGGCGGCTGAGCTGGCATCGCGCTATATCAATGACCGTCACATGCCGGAC
AAGGCGATCGATGTGATCGATGAGGCGGGTGCTTATCAGCGTCTGCAGCCGGTCGAGAAGCGGGTGAAGCGCATCGACGT
GGCCCAGGTCGAGGATATCGTGGCGAAAATTGCGCGGATTCCGCCAAAACACGTCACCAGCTCCGACAAGGAACTGCTGC
GTAATCTGGAACGTGACCTCAAGCTCACCGTTTTCGGCCAGGATGCGGCCATCGACTCGCTGTCCACCGCGATCAAGCTG
TCGCGTGCGGGCCTCAAGTCGCCGGACAAGCCTGTCGGTTCGTTCCTGTTCGCCGGCCCTACCGGCGTCGGCAAGACCGA
GGCTGCGCGGCAGTTGGCCAAGGCCATGGGGATCGAGTTGGTGCGGTTCGACATGTCCGAGTACATGGAGCGTCACACCG
TGTCGCGCCTGATCGGTGCGCCTCCAGGCTATGTTGGCTTCGACCAGGGCGGCCTGTTGACCGAGGCAATCACCAAGCAG
CCGCATTGCGTATTGTTGCTCGATGAAATCGAGAAGGCTCACCCGGAAGTCTTCAACCTGCTGCTGCAGGTCATGGATCA
CGGGACCCTGACCGACAACAACGGGCGCAAGGCGGACTTCCGCAATGTGATCGTGATCATGACTACCAACGCCGGTGCTG
AAACGGCTGCGCGGGCTTCGATCGGCTTTACGCATCAGGATCACTCGTCCGATGCGATGGAAGTCATCAAGAAGAGCTTT
ACGCCGGAGTTCCGCAACCGCTTGGACACTATTATCCAGTTTGGTCGCCTCAGCCATGAGGTCATCAAAAGCGTGGTGGA
CAAGTTCCTTACCGAGCTTCAAGCGCAGTTGGAAGACAAGCGCGTGCAGTTGGACGTAACGGACGCGGCGCGCAATTGGC
TGGCAGAGGGTGGTTACGACGCGGCAATGGGTGCACGCCCAATGGCACGTCTGATCCAGGACAAGATCAAGCGGCCATTG
GCCGAAGAGATCCTGTTTGGCGAATTGTCCGACCATGGTGGCGTGGTGCATATCGACCTGAAGGACGGCGAGCTGACCTT
CGAGTTCGAAACCACGGCTGAAATGGCCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (215-326)

• AAA lid domain (AAA_lid_9) (354-457)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

• AAA domain (Cdc48 subfamily) (AAA_2) (490-651)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (657-737)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.951	100	0.431
clpC	Streptococcus pneumoniae TIGR4	38.917	100	0.409
clpC	Streptococcus pneumoniae D39	38.917	100	0.409
clpC	Streptococcus pneumoniae Rx1	38.917	100	0.409
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.587	96.693	0.402
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.516	100	0.396
clpC	Streptococcus mutans UA159	44.516	82.011	0.365
clpC	Lactococcus lactis subsp. cremoris KW2	45.199	79.894	0.361