Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   WUE2121_RS04365 Genome accession   NZ_CP012394
Coordinates   833542..834483 (+) Length   313 a.a.
NCBI ID   WP_002235685.1    Uniprot ID   -
Organism   Neisseria meningitidis strain WUE2121     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828542..839483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WUE2121_RS04340 (WUE2121_0814) - 828752..829261 (+) 510 WP_063399725.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WUE2121_RS04345 (WUE2121_0815) - 829759..830346 (-) 588 WP_002220670.1 superoxide dismutase -
  WUE2121_RS04350 (WUE2121_0816) dnaB 830509..831915 (+) 1407 WP_002220671.1 replicative DNA helicase -
  WUE2121_RS04355 (WUE2121_0817) pilH 832224..832898 (+) 675 WP_063399723.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WUE2121_RS04360 (WUE2121_0818) pilV 832922..833545 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  WUE2121_RS04365 (WUE2121_0819) pilJ 833542..834483 (+) 942 WP_002235685.1 PilW family protein Machinery gene
  WUE2121_RS04370 (WUE2121_0820) pilK 834462..835058 (+) 597 WP_002236356.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WUE2121_RS04375 (WUE2121_0821) pilL 835063..835560 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  WUE2121_RS04385 (WUE2121_0822) - 837895..838323 (-) 429 Protein_828 AzlC family ABC transporter permease -
  WUE2121_RS04390 (WUE2121_0823) dut 838466..838918 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34530.27 Da        Isoelectric Point: 8.7141

>NTDB_id=154211 WUE2121_RS04365 WP_002235685.1 833542..834483(+) (pilJ) [Neisseria meningitidis strain WUE2121]
MKRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGSDVVPNVAQKKPLFSLKRNSTNKLIPITESSDINYQNFFQVGSALIFQYGIDDVNASAETTVVSSCAAISK
PGKQIPTLEDAKKELKIPDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRRMKVRYIYV
SGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=154211 WUE2121_RS04365 WP_002235685.1 833542..834483(+) (pilJ) [Neisseria meningitidis strain WUE2121]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAGTGATGTTGTTCCCAATGTGGCGCAAAAAAAACCTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAGATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTGGAAGATGCAAAAAAAGAATTGAAGATTCCGGATCAGGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGAAAGTGCGGTATATCTATGTT
TCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

88.291

100

0.891

Multiple sequence alignment