Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A6M16_RS10400 Genome accession   NZ_CP015557
Coordinates   2128801..2129895 (+) Length   364 a.a.
NCBI ID   WP_024395965.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123801..2134895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS10375 (A6M16_10380) pgsA 2124320..2124859 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A6M16_RS10380 (A6M16_10385) rodZ 2124869..2125726 (-) 858 WP_024395962.1 cytoskeleton protein RodZ -
  A6M16_RS10385 (A6M16_10390) yfmH 2125808..2127091 (-) 1284 WP_024395963.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  A6M16_RS10390 (A6M16_10395) yfmF 2127088..2128341 (-) 1254 WP_063725404.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  A6M16_RS10395 (A6M16_10400) yaaA 2128415..2128798 (+) 384 WP_014736600.1 S4 domain-containing protein YaaA -
  A6M16_RS10400 (A6M16_10405) recF 2128801..2129895 (+) 1095 WP_024395965.1 DNA replication/repair protein RecF Machinery gene
  A6M16_RS10405 (A6M16_10410) guaB 2129966..2131447 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  A6M16_RS10410 (A6M16_10415) trpS 2131679..2132704 (-) 1026 WP_024395966.1 tryptophan--tRNA ligase -
  A6M16_RS10415 (A6M16_10420) - 2133059..2133931 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42277.38 Da        Isoelectric Point: 7.2328

>NTDB_id=154202 A6M16_RS10400 WP_024395965.1 2128801..2129895(+) (recF) [Streptococcus suis strain DN13]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERYRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=154202 A6M16_RS10400 WP_024395965.1 2128801..2129895(+) (recF) [Streptococcus suis strain DN13]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGTAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATCCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTATTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTAGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTTTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTATCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATCACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442