Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   A6M16_RS09770 Genome accession   NZ_CP015557
Coordinates   1995198..1995647 (-) Length   149 a.a.
NCBI ID   WP_014638750.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990198..2000647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS09755 (A6M16_09760) - 1990831..1991625 (+) 795 WP_024395466.1 formate/nitrite transporter family protein -
  A6M16_RS09760 (A6M16_09765) - 1991714..1993498 (-) 1785 WP_024395465.1 ABC transporter ATP-binding protein -
  A6M16_RS09765 (A6M16_09770) - 1993499..1995205 (-) 1707 WP_063725386.1 ABC transporter ATP-binding protein -
  A6M16_RS09770 (A6M16_09775) rcrR 1995198..1995647 (-) 450 WP_014638750.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  A6M16_RS09775 (A6M16_09780) - 1995869..1996885 (+) 1017 WP_024395463.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  A6M16_RS09780 (A6M16_09785) galU 1996930..1997829 (+) 900 WP_024395462.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A6M16_RS09785 (A6M16_09790) - 1997847..1998524 (-) 678 WP_024395461.1 rhomboid family intramembrane serine protease -
  A6M16_RS09790 (A6M16_09795) - 1998508..1999050 (-) 543 WP_024395460.1 5-formyltetrahydrofolate cyclo-ligase -
  A6M16_RS09795 (A6M16_09800) - 1999091..2000218 (-) 1128 WP_024395459.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17510.02 Da        Isoelectric Point: 7.1308

>NTDB_id=154197 A6M16_RS09770 WP_014638750.1 1995198..1995647(-) (rcrR) [Streptococcus suis strain DN13]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFLGIQKEDFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=154197 A6M16_RS09770 WP_014638750.1 1995198..1995647(-) (rcrR) [Streptococcus suis strain DN13]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAATTAAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCACTTTTTTTGGGCATTCAAAAAGAGGACTTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.366

95.302

0.423

Multiple sequence alignment