Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DE8555_RS10065 Genome accession   NZ_CP012393
Coordinates   1934962..1935426 (-) Length   154 a.a.
NCBI ID   WP_011798959.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929962..1940426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS10020 (DE8555_1880) - 1929976..1930221 (-) 246 WP_002212272.1 hypothetical protein -
  DE8555_RS10030 (DE8555_1881) - 1930333..1930761 (+) 429 WP_002212270.1 CopD family protein -
  DE8555_RS10035 (DE8555_1882) - 1930773..1931249 (+) 477 WP_002231682.1 CYTH domain-containing protein -
  DE8555_RS10040 (DE8555_1883) - 1931599..1932087 (-) 489 WP_063399896.1 dihydrofolate reductase -
  DE8555_RS10045 (DE8555_1884) aroG 1932155..1933210 (-) 1056 WP_002235429.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  DE8555_RS13990 - 1933372..1933599 (-) 228 WP_153310284.1 hypothetical protein -
  DE8555_RS10055 (DE8555_1885) - 1933826..1934134 (+) 309 WP_017629289.1 membrane protein -
  DE8555_RS14400 (DE8555_1886) - 1934183..1934287 (-) 105 Protein_1893 IS1595 family transposase -
  DE8555_RS10060 - 1934391..1934597 (-) 207 WP_002220254.1 hypothetical protein -
  DE8555_RS10065 comE 1934962..1935426 (-) 465 WP_011798959.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16563.76 Da        Isoelectric Point: 10.8773

>NTDB_id=154184 DE8555_RS10065 WP_011798959.1 1934962..1935426(-) (comE) [Neisseria meningitidis strain DE8555]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=154184 DE8555_RS10065 WP_011798959.1 1934962..1935426(-) (comE) [Neisseria meningitidis strain DE8555]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment