Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   A6M16_RS05765 Genome accession   NZ_CP015557
Coordinates   1159262..1161031 (-) Length   589 a.a.
NCBI ID   WP_024395154.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154262..1166031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS05750 (A6M16_05755) - 1156508..1156666 (-) 159 WP_015646905.1 hypothetical protein -
  A6M16_RS05755 (A6M16_05760) obgE 1157041..1158354 (-) 1314 WP_032536533.1 GTPase ObgE -
  A6M16_RS05760 (A6M16_05765) - 1158558..1158686 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  A6M16_RS10680 - 1158858..1159193 (-) 336 WP_079270670.1 hypothetical protein -
  A6M16_RS05765 (A6M16_05770) uvrC 1159262..1161031 (-) 1770 WP_024395154.1 excinuclease ABC subunit UvrC Machinery gene
  A6M16_RS05770 (A6M16_05775) - 1161272..1162015 (+) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  A6M16_RS05775 (A6M16_05780) - 1162012..1163622 (+) 1611 WP_063725276.1 hypothetical protein -
  A6M16_RS05780 (A6M16_05785) - 1163645..1164088 (-) 444 WP_029750186.1 VOC family protein -
  A6M16_RS05785 (A6M16_05790) ldcB 1164177..1164932 (-) 756 WP_024395157.1 LD-carboxypeptidase LdcB/DacB -
  A6M16_RS05790 (A6M16_05795) - 1165294..1165545 (-) 252 WP_002943658.1 phage holin -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 67694.89 Da        Isoelectric Point: 9.2546

>NTDB_id=154174 A6M16_RS05765 WP_024395154.1 1159262..1161031(-) (uvrC) [Streptococcus suis strain DN13]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKRFKSI
GNIQSASLQEIAEAGVPYKVAELVKEKLK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=154174 A6M16_RS05765 WP_024395154.1 1159262..1161031(-) (uvrC) [Streptococcus suis strain DN13]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCATATTTTCGTGGTGCTCATGATACCAAGACAG
AGGCCTTGGTGTCAGAGATTGCGGACTTTGAATTCATCGTAACGGATTCTAATATCGAGGCGCTCTTGTTGGAAATAAAT
CTGATTCAGGAAAACAAGCCTCGCTATAATATCATGCTCAAGGATGACAAGTCTTATCCCTTTATCAAGATTACCAAGGA
ACGTCACCCACGGCTGCTCATTACACGGCAGATTAAGAAGGATGGCGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAGCTATTGGAGCGTCTGTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTCTGGCTCACGGGGAAAACCTGCCCAGCCTGTCTGACTATGACAAGATGGCCAAGGAAGT
TGCCCAGTTCTTGACAGGGCATGATGATAAGATTGTCAAGGAAGTTCAGGACAAGATGAAGGCAGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGTGATGTCCTCCAATCCATTTCAACCCTACGGACCAAGCAACGAGTGATGGCTCAT
GACTTGCAAAACCGCGATGTCTTTGGTTATTATGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAACCTTTTTCCATACTATAATGATGCGGATGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTGGATACCAAGGTCATCAAGCCTCAGCGTGGCGAGAAGAAGCAACTCATCAATTTGGCAACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCTGTGGAGAATATTGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGATAACTCCAACATCATGGGTACCAGTCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAAGACGGTGGAGGGACCGGATGACTATGCTTC
CATGCGAGAAGTGTTGCAGCGGCGGTACAGTCGGGTACTGCGGGACGGTTTGACACCGCCTGATTTGATTATTATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACCCACGAATTGCTTTTTGGCAATCCGCTAGAGGTGGTCGAGTTGCCCCGTAATTCACAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAGTTTCACCGTCAGGTACGCTCAAAAAATT
CCTTCTCATCAAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAGCGTTTCAAGTCCATT
GGCAATATCCAGTCAGCAAGTTTGCAGGAAATCGCAGAAGCTGGTGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAGAA
GTTGAAGTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(196-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.551

99.83

0.774
  uvrC Streptococcus pneumoniae R6

77.211

99.83

0.771
  uvrC Streptococcus pneumoniae D39

77.211

99.83

0.771

Multiple sequence alignment