Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A6M16_RS00215 Genome accession   NZ_CP015557
Coordinates   28495..29277 (+) Length   260 a.a.
NCBI ID   WP_014637252.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23495..34277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS00195 (A6M16_00195) mreD 24316..24831 (+) 516 WP_015646212.1 rod shape-determining protein MreD -
  A6M16_RS00200 (A6M16_00200) pcsB 24916..26172 (+) 1257 WP_024395335.1 peptidoglycan hydrolase PcsB -
  A6M16_RS00205 (A6M16_00205) - 26275..27243 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  A6M16_RS00210 (A6M16_00210) - 27330..28508 (+) 1179 WP_024395334.1 pyridoxal phosphate-dependent aminotransferase -
  A6M16_RS00215 (A6M16_00215) recO 28495..29277 (+) 783 WP_014637252.1 DNA repair protein RecO Machinery gene
  A6M16_RS00220 (A6M16_00220) plsX 29274..30281 (+) 1008 WP_024395333.1 phosphate acyltransferase PlsX -
  A6M16_RS00225 (A6M16_00225) - 30274..30522 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  A6M16_RS00230 (A6M16_00230) purC 30640..31347 (+) 708 WP_024395332.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4193

>NTDB_id=154115 A6M16_RS00215 WP_014637252.1 28495..29277(+) (recO) [Streptococcus suis strain DN13]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=154115 A6M16_RS00215 WP_014637252.1 28495..29277(+) (recO) [Streptococcus suis strain DN13]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACTT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCTAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673

Multiple sequence alignment