Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DE10444_RS01540 Genome accession   NZ_CP012392
Coordinates   284572..285270 (+) Length   232 a.a.
NCBI ID   WP_002228941.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279572..290270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS01520 (DE10444_0278) trpC 280894..281676 (-) 783 WP_002218674.1 indole-3-glycerol phosphate synthase TrpC -
  DE10444_RS01525 (DE10444_0279) - 281727..282683 (-) 957 WP_002218675.1 YheT family hydrolase -
  DE10444_RS01530 (DE10444_0280) murJ 282816..284354 (-) 1539 WP_002218676.1 murein biosynthesis integral membrane protein MurJ -
  DE10444_RS14290 - 284354..284545 (-) 192 WP_002260368.1 hypothetical protein -
  DE10444_RS01540 (DE10444_0281) dsbA1 284572..285270 (+) 699 WP_002228941.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DE10444_RS01545 (DE10444_0282) amgK 285327..286331 (-) 1005 WP_002218680.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DE10444_RS01550 (DE10444_0283) - 286401..288809 (+) 2409 WP_002259824.1 LPS-assembly protein LptD -
  DE10444_RS01555 (DE10444_0284) - 288911..289939 (+) 1029 WP_079255465.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25287.88 Da        Isoelectric Point: 5.6016

>NTDB_id=154105 DE10444_RS01540 WP_002228941.1 284572..285270(+) (dsbA1) [Neisseria meningitidis strain DE10444]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMHTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=154105 DE10444_RS01540 WP_002228941.1 284572..285270(+) (dsbA1) [Neisseria meningitidis strain DE10444]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAATTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGCACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment