Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   A6K30_RS05650 Genome accession   NZ_CP015528
Coordinates   1117275..1117655 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain YH501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112275..1122655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6K30_RS05625 (A6K30_05625) aspS 1112788..1114539 (+) 1752 WP_002822668.1 aspartate--tRNA ligase -
  A6K30_RS05630 (A6K30_05630) - 1114536..1115111 (+) 576 WP_002781658.1 adenylate kinase -
  A6K30_RS05635 (A6K30_05635) ppa 1115121..1115639 (+) 519 WP_002776378.1 inorganic diphosphatase -
  A6K30_RS05640 (A6K30_05640) msrA 1115687..1116187 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A6K30_RS05645 (A6K30_05645) - 1116410..1117264 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A6K30_RS05650 (A6K30_05650) dprB 1117275..1117655 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  A6K30_RS05655 (A6K30_05655) dprA 1117652..1118422 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  A6K30_RS05660 (A6K30_05660) - 1118412..1119464 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  A6K30_RS05665 (A6K30_05665) ilvC 1119467..1120489 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  A6K30_RS05670 (A6K30_05670) - 1120612..1122546 (+) 1935 WP_063652037.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=154101 A6K30_RS05650 WP_002776373.1 1117275..1117655(-) (dprB) [Campylobacter coli strain YH501]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=154101 A6K30_RS05650 WP_002776373.1 1117275..1117655(-) (dprB) [Campylobacter coli strain YH501]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment